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This repository has been archived by the owner on Apr 19, 2023. It is now read-only.

Issues: vib-singlecell-nf/vsn-pipelines

62 Open 142 Closed
62 Open 142 Closed
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Issues list

throw new Exception("Cannot append SCENIC loom to SCope loom because the IDs do not match.")[BUG] bug Something isn't working
#392 opened Aug 31, 2022 by LinearParadox
6
[BUG] Cannot invoke method containsKey() on null object bug Something isn't working
#382 opened Jun 10, 2022 by AlinaKurjan
2
[BUG] Unknown configuration profile: 'single_sample_decontx_scrublet' bug Something isn't working
#381 opened Jun 7, 2022 by s-aibar
[BUG] Cannot invoke method containsKey() on null object bug Something isn't working
#378 opened Apr 8, 2022 by HocheolJang426
2
[BUG] There is no package called "SeuratObject" bug Something isn't working
#376 opened Mar 16, 2022 by alefrol638
[BUG] scenic multirun stalls during Arboreto with multiprocessing bug Something isn't working
#375 opened Mar 14, 2022 by Jay-Leung
FATAL: container creation failed: mount bug Something isn't working
#373 opened Feb 4, 2022 by gianfilippo
2
[BUG] Include statement is not allowed within a workflow definition bug Something isn't working
#369 opened Dec 20, 2021 by matt-sd-watson
9
[SUGGESTION] Add Median genes/UMIs to Reporting enhancement New feature or request
#367 opened Dec 7, 2021 by KrisDavie
Failed to find loop device[BUG] bug Something isn't working
#364 opened Oct 14, 2021 by Zifeng-L
[BUG] Error: Cannot append SCENIC loom to SCope loom because the IDs do not match bug Something isn't working
#363 opened Oct 11, 2021 by iUser1234
[BUG] Failing to parse SRA metadata bug Something isn't working
#360 opened Aug 31, 2021 by dweemx
[BUG] loomHandler.nf - process PUBLISH_LOOM record container is missing bug Something isn't working
#359 opened Aug 28, 2021 by Hynst
Using flavor='seurat_v3' for feature selection may give better results [SUGGESTION] enhancement New feature or request fixed_in_develop Issue is fixed in develop branch
#354 opened Aug 9, 2021 by cbravo93
@dweemx
2
Scrublet: ValueError: columns overlap but no suffix specified: Index(['nGene', 'nUMI'], dtype='object') [BUG] bug Something isn't working
#353 opened Aug 9, 2021 by cbravo93
1
[SUGGESTION] Take 10x Multiome data as inputs enhancement New feature or request
#351 opened Jul 23, 2021 by cflerin
[SUGGESTION] Input of MEX files from non-cellranger formats enhancement New feature or request
#350 opened Jul 16, 2021 by cflerin
[SUGGESTION] Add uncorrected UMAP/tSNE when using batch effect correction (e.g. Harmony/BBKNN) enhancement New feature or request
#337 opened Apr 28, 2021 by cbravo93
[NEW TOOL] Add ATAC-DoubletDetector enhancement New feature or request new tool Suggestion for a new tool
#333 opened Apr 1, 2021 by dweemx
@dweemx
[singlecelltoolkit] [SUGGESTION] Add script to calculate saturation curve of 10x samples enhancement New feature or request
#332 opened Apr 1, 2021 by dweemx
@cflerin @dweemx
2
[BUG] [scenic] Regulons can be missing in multi-runs mode bug Something isn't working
#319 opened Feb 22, 2021 by dweemx
single_sample_scrublet with different resolution parameters returns a loom file with only clustering for the last resolution listed[BUG] bug Something isn't working
#303 opened Feb 9, 2021 by cbravo93 0.27.0
@dweemx
[BUG] loom with non-standard CellID and Gene attributes [SCENIC] bug Something isn't working
#279 opened Dec 10, 2020 by cflerin
1
[SUGGESTION] Add the option of specifying mitochondrial genes using a gene set instead of pattern enhancement New feature or request
#264 opened Dec 4, 2020 by SeppeDeWinter
2
[BUG] Publish processes are not cached when resuming bug Something isn't working
#258 opened Nov 24, 2020 by cflerin
5
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