CHANGES.txt v2024-04-18; documenting changes associated with release …

…v2.2.1_2024-04-18

CHANGES.txt

@@ -1,5 +1,16 @@
+18Apr24    * created GitHub release v2.2.1_2024-04-18
+           * created Docker image v20240418
+16-17Apr24 * run_get_phylomarkers_pipeline.sh v2.8.1.4_2024-04-17
+            -Improved reporting at the end of run (STDOUT and file written to disk)
+            of key ouput files and figures generated by the pipeline, calling new
+            functions rm_top_dir_prefix_from_wkdir and read_svg_figs_into_hash
+           * get_phylomarkers_fun_lib v2024-04-17
+            - created new functions rm_top_dir_prefix_from_wkdir and read_svg_figs_into_hash
+            - prepended missing "$bindir"/ to several iqtree calls in run_ASTRAL and compute_ASTRALspTree_branch_lenghts
+            - improved print_start_time progress reporting from run_ASTRAL and compute_ASTRALspTree_branch_lenghts
 15Apr24  * compiled a static versions of snp-sites for Linux (bin/linux/snp-sites-static), 
              which is directly called from run_get_phylomarkers_pipeline.sh v2.8.1._2024-04-15
+	     Thanks to Alfredo Hernandez from CCG-UNAM & LCG-UNAM for compiling this binary
 	 * run_get_phylomarkers_pipeline.sh v2.8.1._2024-04-15 now calls $bindir/snp-sites-static 
 	 * Updated Dockerfile (v2024-04-15) to avoid installing non-required R packages and snp-sites
 	 * Updated INSTALL.md and README.md