0.21.0

0.21.0 (2024-11-14)

Features

• print No OTUs found for otu list as appropriate (37893fe)

0.20.0

0.20.0 (2024-11-08)

Bug Fixes

• show help if no subcommand provided for otu update (5587d37)

Features

• make detailed logging fully opt-in (e0dd809)

0.19.0

0.19.0 (2024-10-21)

Bug Fixes

• fetch all accessions associated with a taxonomy id (010d474)

Features

• add isolate plan modification commands (c98a7c2)

0.18.1

0.18.1 (2024-10-11)

Bug Fixes

• resolve ncbi elink errors (16f1373)

0.18.0

0.18.0 (2024-10-11)

Features

• support repo settings and default_segment_length_tolerance (acff3b1)

0.17.0

0.17.0 (2024-10-09)

Bug Fixes

• automatically retry failed ncbi elink queries (14337c0)
• fix SegmentName rendering bug (d600ff2)

Features

• move --debug option to root command (0de1cd1)
• remove --autofill option from otu create (c10cfd4)
• return error when duplicate accessions provided (7f26348)

0.16.0

0.16.0 (2024-10-03)

Features

• handle segment name ambiguity (9ec552e)
• improve perf with index based on sqlite (8f42b05)

0.15.0

0.15.0 (2024-09-23)

Features

• allow unnamed or manually defined names for isolates (29ed30f)

0.14.0

0.14.0 (2024-09-11)

Features

• allow unnamed isolates (d9c97a9)

0.13.0

0.13.0 (2024-09-11)

Features

• add isolate sequence replacement commands (6225ed6)