feat: support jobs without rights field

* Support jobs without `rights` field.
* Pin Python at 3.12.3.

Dockerfile

@@ -26,7 +26,7 @@ RUN ./configure --prefix /build/samtools
 RUN make
 RUN make install
 
-FROM python:3.10-bookworm as rbuild
+FROM python:3.12.3-bookworm as rbuild
 WORKDIR /build
 RUN apt-get update && apt-get install -y libdeflate0 r-base r-cran-littler
 RUN R -e "install.packages('BiocManager')"
@@ -36,15 +36,15 @@ RUN R -e "install.packages(c('data.table', 'dplyr', 'mltools', 'randomForest', '
 COPY ./iimi ./iimi
 RUN R -e "install.packages('iimi', repos = NULL, type = 'source')"
 
-FROM python:3.10-bookworm as base
+FROM python:3.12.3-bookworm as base
 WORKDIR /app
 RUN apt-get update && apt-get install -y libdeflate0 r-base r-cran-littler
 COPY --from=prep /build/bowtie2/* /usr/local/bin/
 COPY --from=prep /build/pigz-2.8/pigz /usr/local/bin/pigz
 COPY --from=prep /build/samtools/bin/samtools /usr/local/bin/samtools
 COPY --from=prep /build/skewer /usr/local/bin/
-RUN curl -sSL https://install.python-poetry.org | python - --version 1.7.1
-ENV PATH="/root/.local/bin:${PATH}"
+RUN curl -sSL https://install.python-poetry.org | python3 - --version 1.8.3
+ENV PATH="/root/.local/bin:$PATH"
 COPY poetry.lock pyproject.toml ./
 RUN poetry install --without dev --no-root
 COPY --from=rbuild /usr/local/lib/R/site-library /usr/local/lib/R/site-library