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Fix spatialdata configuration (#396)
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keller-mark authored Dec 18, 2024
1 parent 94193c0 commit 823e00b
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions docs/notebooks/spatial_data.ipynb
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" sdata_path=spatialdata_filepath,\n",
" # The following paths are relative to the root of the SpatialData zarr store on-disk.\n",
" image_path=\"images/CytAssist_FFPE_Human_Breast_Cancer_full_image\",\n",
" table_path=\"table/table\",\n",
" obs_feature_matrix_path=\"table/table/X\",\n",
" table_path=\"tables/table\",\n",
" obs_feature_matrix_path=\"tables/table/X\",\n",
" obs_spots_path=\"shapes/CytAssist_FFPE_Human_Breast_Cancer\",\n",
" region=\"CytAssist_FFPE_Human_Breast_Cancer\",\n",
" coordinate_system=\"global\",\n",
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.9.0"
"version": "3.10.14"
}
},
"nbformat": 4,
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