#431 ec for deps + working PyQt5

431_Spyder/PyQt-builder_2023b.eb

@@ -0,0 +1,37 @@
+# Thomas Hoffmann, EMBL Heidelberg, structures-it@embl.de, 2024/01
+easyblock = 'PythonBundle'
+
+name = 'PyQt-builder'
+version = '1.16.4'
+
+homepage = 'https://github.com/Python-PyQt/PyQt-builder'
+description = """PyQt-builder is the PEP 517 compliant build system for PyQt and projects that   
+extend PyQt. It extends the SIP build system and uses Qt’s qmake to perform the 
+actual compilation and installation of extension modules.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+builddependencies = [('binutils', '2.40')]
+dependencies = [
+    ('Python', '3.11.5'),
+    ('SIP', '6.8.3'),
+]
+
+
+exts_list = [
+    ('pyqt_builder', version, {
+        'modulename': 'pyqtbuild',
+        'checksums': ['4515e41ae379be2e54f88a89ecf47cd6e4cac43e862c4abfde18389c2666afdf'],
+    }),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python%(pyshortver)s/'],
+}
+
+moduleclass = 'lang'

431_Spyder/QtPy_2023b.eb

@@ -0,0 +1,29 @@
+easyblock = 'PythonPackage'
+
+name = 'QtPy'
+version = '2.4.1'
+
+homepage = "https://github.com/spyder-ide/qtpy"
+description = """QtPy is a small abstraction layer that lets you write applications using a single API call to
+ either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['a5a15ffd519550a1361bdc56ffc07fda56a6af7292f17c7b395d4083af632987']
+
+builddependencies = [
+    ('binutils', '2.40'),
+]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('PyQt5', '5.15.10'),
+    ('Python-bundle-PyPI', '2023.10'),
+]
+
+use_pip = True
+download_dep_fail = True
+sanity_pip_check = True
+
+moduleclass = 'vis'

431_Spyder/log1a.txt

@@ -0,0 +1,47 @@
+# output for command: export PATH=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/bin:$PATH && export PYTHONPATH=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/lib/python3.11/site-packages:$PYTHONPATH &&  sip-build  --confirm-license --no-designer-plugin --no-qml-plugin --no-dbus-python --no-make --jobs 8 --qmake-setting 'QMAKE_CXXFLAGS+=$$(CFLAGS)' --qmake-setting 'QMAKE_CFLAGS+=$$(CFLAGS)' --qmake-setting 'QMAKE_LFLAGS+=$$(LDFLAGS)' --api-dir /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/qsci --scripts-dir /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/bin --target-dir /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/lib/python3.11/site-packages
+
+Querying qmake about your Qt installation...
+This is the GPL version of PyQt 5.15.11 (licensed under the GNU General Public License) for Python 3.11.5 on linux.
+Found the license file 'pyqt-gpl.sip'.
+Checking to see if the QtCore bindings can be built...
+Checking to see if the QtNetwork bindings can be built...
+Checking to see if the QtGui bindings can be built...
+Checking to see if the QtWidgets bindings can be built...
+Checking to see if the QtQml bindings can be built...
+Checking to see if the QAxContainer bindings can be built...
+Checking to see if the QtAndroidExtras bindings can be built...
+Checking to see if the QtBluetooth bindings can be built...
+Checking to see if the QtDBus bindings can be built...
+Checking to see if the QtDesigner bindings can be built...
+Checking to see if the Enginio bindings can be built...
+Checking to see if the QtHelp bindings can be built...
+Checking to see if the QtMacExtras bindings can be built...
+Checking to see if the QtMultimedia bindings can be built...
+Checking to see if the QtMultimediaWidgets bindings can be built...
+Checking to see if the QtNfc bindings can be built...
+Checking to see if the QtOpenGL bindings can be built...
+Checking to see if the QtPositioning bindings can be built...
+Checking to see if the QtLocation bindings can be built...
+Checking to see if the QtPrintSupport bindings can be built...
+Checking to see if the QtQuick bindings can be built...
+Checking to see if the QtQuick3D bindings can be built...
+Checking to see if the QtQuickWidgets bindings can be built...
+Checking to see if the QtRemoteObjects bindings can be built...
+Checking to see if the QtSensors bindings can be built...
+Checking to see if the QtSerialPort bindings can be built...
+Checking to see if the QtSql bindings can be built...
+Checking to see if the QtSvg bindings can be built...
+Checking to see if the QtTest bindings can be built...
+Checking to see if the QtTextToSpeech bindings can be built...
+Checking to see if the QtWebChannel bindings can be built...
+Checking to see if the QtWebKit bindings can be built...
+Checking to see if the QtWebKitWidgets bindings can be built...
+Checking to see if the QtWebSockets bindings can be built...
+Checking to see if the QtWinExtras bindings can be built...
+Checking to see if the QtX11Extras bindings can be built...
+Checking to see if the QtXml bindings can be built...
+Checking to see if the QtXmlPatterns bindings can be built...
+Checking to see if the _QOpenGLFunctions_2_0 bindings can be built...
+Checking to see if the _QOpenGLFunctions_2_1 bindings can be built...
+Checking to see if the _QOpenGLFunctions_4_1_Core bindings can be built...
+sip-build: '12.15' is not a supported ABI version

431_Spyder/pyqt5_2023b.eb

@@ -0,0 +1,121 @@
+easyblock = 'PythonBundle'
+
+name = 'PyQt5'
+version = '5.15.10'
+
+homepage = 'https://www.riverbankcomputing.com/software/pyqt'
+description = """PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company.
+This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+toolchainopts = {'cstd': 'c++11'}
+
+builddependencies = [
+    ('binutils', '2.40'),
+    ('PyQt-builder', '1.16.4'),
+]
+dependencies = [
+    ('Python', '3.11.5'),
+    ('Qt5', '5.15.13'),
+]
+local_sipdir = '%(installdir)s/share/sip'
+
+local_pylibdir = '%(installdir)s/lib/python%(pyshortver)s/site-packages'
+
+local_setup_env = "export PATH=%(installdir)s/bin:$PATH && "
+local_setup_env += "export PYTHONPATH=%s:$PYTHONPATH && " % local_pylibdir
+
+
+local_sip_configopts_common = [
+    "--no-make",
+    "--jobs %(parallel)s",
+    "--qmake-setting 'QMAKE_CXXFLAGS+=$$(CFLAGS)'",
+    "--qmake-setting 'QMAKE_CFLAGS+=$$(CFLAGS)'",
+    "--qmake-setting 'QMAKE_LFLAGS+=$$(LDFLAGS)'",
+    "--api-dir %(installdir)s/qsci",
+    "--scripts-dir %(installdir)s/bin",
+    "--target-dir %s" % local_pylibdir,
+]
+
+local_pyqt5_configopts = [
+    "--confirm-license",
+    "--no-designer-plugin",
+    "--no-qml-plugin",
+] + local_sip_configopts_common
+
+local_pyqtwebengine_configopts = local_sip_configopts_common
+default_easyblock = 'PythonPackage'
+
+components = [
+    ('%s_sip' % name, '12.13.0', {
+        'source_urls': [PYPI_SOURCE],
+        'sources': [SOURCE_TAR_GZ],
+        'start_dir': '%(name)s-%(version)s',
+        'use_pip': True,
+        'checksums': ['7f321daf84b9c9dbca61b80e1ef37bdaffc0e93312edae2cd7da25b953971d91'],
+    }),
+    (name, version, {
+        'source_urls': [PYPI_SOURCE],
+        'sources': [SOURCE_TAR_GZ],
+        'easyblock': 'ConfigureMake',
+        'configure_cmd': 'sip-build',
+        'start_dir': '%(name)s-%(version)s',
+        'configure_without_installdir': True,
+        'preconfigopts': local_setup_env,
+        'configopts': ' '.join(local_pyqt5_configopts),
+        'prebuildopts': local_setup_env + "cd build && ",
+        'preinstallopts': "cd build && ",
+        'checksums': ['d46b7804b1b10a4ff91753f8113e5b5580d2b4462f3226288e2d84497334898a'],
+    }),
+    ('PyQtWebEngine', '5.15.7', {
+        'source_urls': [PYPI_SOURCE],
+        'sources': [SOURCE_TAR_GZ],
+        'easyblock': 'ConfigureMake',
+        'configure_cmd': 'sip-build',
+        'start_dir': '%(name)s-%(version)s',
+        'configure_without_installdir': True,
+        'preconfigopts': local_setup_env,
+        'configopts': ' '.join(local_pyqtwebengine_configopts),
+        'prebuildopts': local_setup_env + "cd build && ",
+        'preinstallopts': "cd build && ",
+        'checksums': ['f121ac6e4a2f96ac289619bcfc37f64e68362f24a346553f5d6c42efa4228a4d'],
+    })
+]
+
+postinstallcmds = [
+    'mkdir %(installdir)s/share',
+    'ln -s --relative %s/%%(name)s/bindings %s' % (local_pylibdir, local_sipdir)
+]
+
+sanity_check_paths = {
+    'files': ['bin/%s' % x for x in [
+        'pyrcc5', 'pyuic5', 'pylupdate5']],
+    'dirs': ['lib/python%(pyshortver)s/site-packages', 'qsci'],
+}
+
+use_pip = True
+
+sanity_pip_check = True
+
+sanity_check_commands = [
+    "python -c 'import %(name)s.QtCore'",
+    "python -c 'import %(name)s.QtWebEngineWidgets'",
+    "pyuic5 --help",
+    "pylupdate5 -version 2>&1 | grep 'pylupdate5 v%(version)s'",
+    "pyrcc5 -version 2>&1 | grep 'pyrcc5 v%(version)s'",
+]
+
+modextrapaths = {
+    'QT_INSTALL_DATA': 'qsci',
+}
+
+moduleclass = 'vis'
+
+# E1: OK
+    # OK The dbus-python package does not seem to be installed. -> --no-dbus-python
+    # sip-build: '12.15' is not a supported ABI version -> change to v12.13 -> still same error
+        # cmd: export PATH=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/bin:$PATH &&
+        # export PYTHONPATH=/scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/lib/python3.11/site-packages:$PYTHONPATH && 
+        # sip-build --confirm-license --no-designer-plugin --no-qml-plugin --no-dbus-python --no-make --jobs 8 --qmake-setting 'QMAKE_CXXFLAGS+=$$(CFLAGS)' --qmake-setting 'QMAKE_CFLAGS+=$$(CFLAGS)' --qmake-setting 'QMAKE_LFLAGS+=$$(LDFLAGS)' --api-dir /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/qsci --scripts-dir /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/bin --target-dir /scratch/gent/vo/001/gvo00117/easybuild/RHEL8/cascadelake-ampere-ib/software/PyQt5/5.15.11-GCCcore-13.2.0/lib/python3.11/site-packages
+        # -> log1.txt + log1a.txt
+        # -> go for PyQt5 5.15.10 (not 5.15.11)

431_Spyder/qtconsole_2023b.eb

@@ -0,0 +1,32 @@
+easyblock = 'PythonPackage'
+
+name = 'Qtconsole'
+version = '5.6.0'
+
+homepage = 'https://jupyter.org/'
+description = """A rich Qt-based console for working with Jupyter kernels, supporting rich media 
+output, session export, and more.
+The Qtconsole is a very lightweight application that largely feels like a       
+terminal, but provides a number of enhancements only possible in a GUI, such as 
+inline figures, proper multiline editing with syntax highlighting, graphical    
+calltips, and more."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['4c82120a3b53a3d36e3f76e6a1a26ffddf4e1ce2359d56a19889c55e1d73a436']
+
+builddependencies = [('binutils', '2.40')]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('IPython', '8.17.2'),
+    ('QtPy', '2.4.1'),
+    ('Jupyter-bundle', '20240522'),
+]
+
+use_pip = True
+download_dep_fail = True
+sanity_pip_check = True
+
+moduleclass = 'vis'

431_Spyder/rtree_2023b.eb

@@ -0,0 +1,28 @@
+easyblock = 'PythonPackage'
+
+name = 'Rtree'
+version = '1.2.0'
+
+homepage = 'https://toblerity.org/rtree/'
+description = """Rtree is a ctypes Python wrapper of libspatialindex that provides a number of advanced spatial
+ indexing features for the spatially curious Python user."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['f5145f7852bf7f95c126fb16bf1a4c2ca9300ae151b07f8a0f7083ea47912675']
+
+builddependencies = [
+    ('binutils', '2.40'),
+]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('libspatialindex', '1.9.3'),
+]
+
+use_pip = True
+sanity_pip_check = True
+download_dep_fail = True
+
+moduleclass = 'data'

431_Spyder/spyder_2023b.eb

@@ -23,7 +23,7 @@ toolchain = {'name': 'foss', 'version': '2023b'}
     # 'intervaltree>=3.0.2', OK pypi bundle
     # 'ipython>=8.13.0,<9.0.0,!=8.17.1; python_version>"3.8"', OK
     # 'jedi>=0.17.2,<0.20.0', OK
-    # 'jellyfish>=0.7', NO -> CREATE (Qt5 ok)
+    # 'jellyfish>=0.7', ok? -> seems as py jellyfish -> get from pypi not update EC from EB
     # 'jsonschema>=3.2.0', OK pypi bundle
     # 'keyring>=17.0.0', OK pypi bundle
     # 'nbconvert>=4.0', OK jupyter-server
@@ -37,8 +37,8 @@ toolchain = {'name': 'foss', 'version': '2023b'}
     # 'pylint>=3.1,<4', OK
     # 'pylint-venv>=3.0.2', ok
     # 'pyls-spyder>=0.4.0', ok
-    # 'pyqt5>=5.15,<5.16', NO -> CREATE
-    # 'pyqtwebengine>=5.15,<5.16', no - will be in pyqt5
+    # 'pyqt5>=5.15,<5.16', OK -> CREATED
+    # 'pyqtwebengine>=5.15,<5.16', ok - will be in pyqt5
     # 'python-lsp-black>=2.0.0,<3.0.0', ok
     # 'python-lsp-server[all]>=1.12.0,<1.13.0', ok
     # 'pyuca>=1.2', ok
@@ -47,9 +47,9 @@ toolchain = {'name': 'foss', 'version': '2023b'}
     # 'qdarkstyle>=3.2.0,<3.3.0', ok
     # 'qstylizer>=0.2.2', ok
     # 'qtawesome>=1.3.1,<1.4.0', ok
-    # 'qtconsole>=5.6.0,<5.7.0', NO -> CREATE
-    # 'qtpy>=2.4.0', NO - should be in qtconsole
-    # 'rtree>=0.9.7', NO -> CREATE
+    # 'qtconsole>=5.6.0,<5.7.0', OK -> CREATED
+    # 'qtpy>=2.4.0', OK - should be in qtconsole
+    # 'rtree>=0.9.7', OK -> CREATED
     # 'setuptools>=49.6.0', OK python
     # 'sphinx>=0.6.6', OK pypi bundle
     # 'spyder-kernels>=3.0.0,<3.2.0', ok
@@ -88,6 +88,9 @@ dependencies = [
     ('jupyter-server', '2.14.0'),
     ('Pylint', '3.2.5'),
     ('PyZMQ', '25.1.2'),
+    ('PyQt5', '5.15.10'),
+    ('Qtconsole', '5.6.0'),
+    ('Rtree', '1.2.0'),
 ]
 
 use_pip = True
@@ -133,6 +136,7 @@ exts_list = [
     ('textdistance', '4.6.3'),
     ('three-merge', '0.1.1'),
     ('watchdog', '5.0.3'),
+    ('jellyfish', '1.1.0'),
     (name, version),
 ]