version bump 1.17.3 #69
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| name: Bioc build and check | |
| on: | |
| push: | |
| paths: | |
| - 'DESCRIPTION' | |
| - '**.yml' | |
| branches: | |
| - devel | |
| pull_request: | |
| branches: | |
| - devel | |
| jobs: | |
| build-check: | |
| runs-on: ubuntu-22.04 | |
| container: bioconductor/bioconductor_docker:devel | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CRAN: https://packagemanager.posit.co/cran/__linux__/jammy/latest | |
| NOT_CRAN: true | |
| TZ: UTC | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Query dependencies | |
| run: | | |
| BiocManager::install(update = TRUE, ask = FALSE) | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: /usr/local/lib/R/site-library | |
| key: ${{ runner.os }}-r-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-r-1- | |
| - name: Install Package Dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE, repos = BiocManager::repositories()) | |
| BiocManager::install(ask = FALSE, update = TRUE) | |
| shell: Rscript {0} | |
| - name: Check Package | |
| id: rcmdcheck | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} |