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Update overlap2.rs
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wang-q committed Dec 2, 2024
1 parent 273e0cb commit afd6b2d
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion src/cmd/overlap2.rs
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,8 @@ pub fn make_subcommand() -> Command {
* All intermediate files (.fasta, .replace.tsv, .db, .las, .show.txt, .ovlp.tsv)
are kept in the working directory.
* .ovlp.tsv records the serials
"###,
)
.arg(
Expand Down Expand Up @@ -274,7 +276,7 @@ pub fn execute(args: &ArgMatches) -> anyhow::Result<()> {

run_cmd!(
cat ${opt_p1}.fasta.replace.tsv ${opt_p2}.fasta.replace.tsv |
${anchr} show2ovlp ${opt_pd}.show.txt stdin --orig -o ${opt_pd}.ovlp.tsv
${anchr} show2ovlp ${opt_pd}.show.txt stdin -o ${opt_pd}.ovlp.tsv
)?;
// anchr::pause();

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