first-commit

.github/workflows/apptainer-image.yml

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+name: Apptainer CI
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+
+  build:
+
+    runs-on: ubuntu-22.04
+
+    steps:
+    - uses: actions/checkout@v4
+    - uses: eWaterCycle/setup-apptainer@v2
+      with:
+        apptainer-version: 1.1.2
+
+    - name: Clean disk space
+      run: |
+        sudo rm -rf /usr/share/dotnet
+        sudo rm -rf /opt/ghc
+        sudo rm -rf "/usr/local/share/boost"
+        sudo rm -rf "$AGENT_TOOLSDIRECTORY"
+        sudo apt-get clean
+    
+    - name: Build the Apptainer image
+      run: |
+        cd container
+        apptainer build dronalize.sif apptainer.def
+
+    - name: Download Data
+      run: |
+        wget -O synthD.zip "https://liuonline-my.sharepoint.com/:u:/g/personal/thewe60_liu_se/EfK1PKrQ3X9LgOd_8TSw1g0BINzDadmTxHF_RHKg_31dGw?e=SEKX9X&download=1"
+        unzip synthD.zip -d ./data
+
+    - name: Run PyTorch Training Loop
+      run: |
+        apptainer run container/dronalize.sif python train.py --config ci

.github/workflows/conda.yml

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+name: Conda CI
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+
+  build:
+    runs-on: ubuntu-22.04
+    defaults:
+      run:
+        shell: bash -el {0}
+    steps:
+      - uses: actions/checkout@v4
+      - uses: conda-incubator/setup-miniconda@v3
+        with:
+          activate-environment: dronalize
+          environment-file: container/environment.yml
+          python-version: 3.11
+          auto-activate-base: false
+
+      - name: Download Data
+        run: |
+          wget -O synthD.zip "https://liuonline-my.sharepoint.com/:u:/g/personal/thewe60_liu_se/EfK1PKrQ3X9LgOd_8TSw1g0BINzDadmTxHF_RHKg_31dGw?e=SEKX9X&download=1"
+          unzip synthD.zip -d ./data
+          
+      - name: Run PyTorch Training Loop
+        run: |
+          python train.py --config ci
+
+      - name: Run Unit Tests
+        run: |
+          python -m pip install pytest
+          pytest

.github/workflows/docker-image.yml

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+name: Docker CI
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+
+  build:
+    runs-on: ubuntu-22.04
+    env:
+      IMAGE_TAG: ${{ github.run_id }}
+    steps:
+    - uses: actions/checkout@v4
+    - name: Build the Docker image
+      run: |
+        cd container
+        docker build -f Dockerfile . -t dronalize:${IMAGE_TAG}
+
+    - name: Download Data
+      run: |
+        wget -O synthD.zip "https://liuonline-my.sharepoint.com/:u:/g/personal/thewe60_liu_se/EfK1PKrQ3X9LgOd_8TSw1g0BINzDadmTxHF_RHKg_31dGw?e=SEKX9X&download=1"
+        unzip synthD.zip -d ./data
+
+    - name: Run PyTorch Training Loop
+      run: |
+        docker run -v "$(pwd)":/app -w /app dronalize:${IMAGE_TAG} python train.py --config ci
+
+    

.github/workflows/mypy.yml

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+name: Linting
+
+on:
+  push:
+    branches: [ main ]
+    paths:
+      - '**.py'
+  pull_request:
+    branches: [ main ]
+    paths:
+      - '**.py'
+
+jobs:
+  mypy:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11"]
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r .github/workflows/requirements.txt
+          pip install mypy
+      - name: Run mypy
+        run: mypy --ignore-missing-imports .

.github/workflows/requirements.txt

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+torch
+torchvision
+torch_geometric
+lightning
+torchmetrics
+pandas
+scikit-learn
+matplotlib
+tqdm
+utm
+osmium
+networkx
+pytest