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1. PLIER PLIER Public

   Pathway-Level Information Extractor (PLIER): a generative model for gene expression data

   R 53 9

2. EPIANN EPIANN Public

   Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks

   Python 7 6

3. DataRemix DataRemix Public

   A universal data transformation for optimal inference from gene expression datasets

   R 8 1

4. nclark-lab/RERconverge nclark-lab/RERconverge Public

   Analysis of convergence between organismal traits and DNA/protein sequences

   HTML 47 28

5. NIFA NIFA Public

   Non-negative Independent Factor Analysis for single cell RNA-seq

   R 11 1