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comment out GitHub Actions to focus on fastANI failure
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widdowquinn committed Feb 19, 2024
1 parent dbcae4d commit 138cc51
Showing 1 changed file with 16 additions and 16 deletions.
32 changes: 16 additions & 16 deletions .github/workflows/build-on-push-to-master.yml
Original file line number Diff line number Diff line change
Expand Up @@ -27,19 +27,19 @@ jobs:
python-version: "3.11"
activate-environment: pyani-github
channels: defaults,bioconda,conda-forge
channel-priority: strict
channel-priority: flexible

- name: Install pip
run: python -m pip install --upgrade pip

- name: Install Development Requirements
run: conda install --file requirements-dev.txt -y
# - name: Install Development Requirements
# run: conda install --file requirements-dev.txt -y

- name: Install Requirements
run: conda install --file requirements.txt -y
# - name: Install Requirements
# run: conda install --file requirements.txt -y

- name: Install third-party tools
run: conda install --file requirements-thirdparty.txt -y
# - name: Install third-party tools
# run: conda install --file requirements-thirdparty.txt -y

- name: Install FastANI
run: conda install --file requirements-fastani.txt -y
Expand All @@ -53,14 +53,14 @@ jobs:
- name: Install pyani
run: pip install -e .

- name: Run Fast Tests with pytest
run: python -m pytest -v -m "not slow" --cov=pyani --cov-report xml:.coverage_fast.xml
# - name: Run Fast Tests with pytest
# run: python -m pytest -v -m "not slow" --cov=pyani --cov-report xml:.coverage_fast.xml

- name: Upload pytest Results
uses: actions/upload-artifact@v4
with:
name: pytest-results-3.11
path: /pyani/test-results-3.11.xml
retention-days: 1
if: ${{ always() }}
# - name: Upload pytest Results
# uses: actions/upload-artifact@v4
# with:
# name: pytest-results-3.11
# path: /pyani/test-results-3.11.xml
# retention-days: 1
# if: ${{ always() }}

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