Type strain vs X of genomes

[nikolomics]

Hello,

We would like to run one sample (type strain) vs 200 genomes. We want to do ANIb and minimise the computational time to run all vs all. Is that possible?

Thank you!

[kiepczi]

Hi @nikolomics!

Thank you very much for showing interest in pyANI! We sincerely apologise for the delay in getting back to you, but things were out of our control at the time.

I'm afraid there is currently no option to do that in pyANI. @widdowquinn previously suggested that comparisons of genomes with a for loop might be able to help (see #55).

Although comparisons against a type strain/single genome are currently not possible, we will keep this in mind and consider them for future enhancements.

Best wishes,

Angelika