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Is it possible to set a reference genome? pairwise one takes too long #55

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fengyuchengdu opened this issue Mar 15, 2017 · 2 comments
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Is it possible to set a reference genome? pairwise one takes too long #55

fengyuchengdu opened this issue Mar 15, 2017 · 2 comments
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@widdowquinn
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enhancement something we'd like pyani to do that it doesn't already

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@fengyuchengdu
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pairwise comparison takes too long and if it is possible to set a reference genome to be compared?
@widdowquinn widdowquinn added the enhancement something we'd like pyani to do that it doesn't already label Mar 15, 2017
@widdowquinn widdowquinn self-assigned this Mar 15, 2017
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Sorry, there's no option to do that at the moment. If you're looking to obtain pairwise comparisons against a single reference with MUMmer (or BLAST), then might a for loop be sufficient for you?

Comparison against a single reference is something we could consider for a future enhancement, though.

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fengyuchengdu commented Mar 15, 2017 via email

@kiepczi kiepczi mentioned this issue Feb 22, 2024
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