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Merged
OddBloke merged 3 commits into from
Sep 16, 2025
Merged

nextflow/25.04.7 package update #65581

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8a859ea
nextflow/25.04.7 package update
wolfi-bot Sep 8, 2025
704878c
remove the jgit dep patch
developer-guy Sep 13, 2025
a926fe1
nextflow: drop auth/gradle to fix dependency resolution
OddBloke Sep 15, 2025
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12 changes: 3 additions & 9 deletions nextflow.yaml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
package:
name: nextflow
version: "25.04.6"
epoch: 2
version: "25.04.7"
epoch: 0
description: A DSL for data-driven computational pipelines.
copyright:
- license: Apache-2.0
Expand All @@ -28,15 +28,9 @@ pipeline:
- uses: git-checkout
with:
repository: https://github.com/nextflow-io/nextflow.git
expected-commit: 6588d533d4f4bc55cf15339000881ea71f674ac5
expected-commit: 0ccdee9c470ddf8f8a052d42c0af1efc29560d47
tag: v${{package.version}}

- uses: auth/gradle

- uses: patch
with:
patches: eclipse-GHSA-vrpq-qp53-qv56-fix.patch

- runs: |
# CVE-2025-48924 GHSA-j288-q9x7-2f5v
sed -i -e 's|org.apache.commons:commons-lang3=3.12.0|org.apache.commons:commons-lang3=3.18.0|g' plugins/nf-wave/build.gradle
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