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Merged
OddBloke merged 3 commits into from
Dec 1, 2025
Merged

nextflow/25.10.2 package update #73396

OddBloke merged 3 commits into from
Dec 1, 2025

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@octo-sts octo-sts bot commented Nov 28, 2025 •
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Commit: c03082c9b816774c799660d22c2b56d72218fddc

@octo-sts octo-sts bot added automated pr nextflow request-version-update request for a newer version of a package P1 This label indicates our scanning found High, Medium or Low CVEs for these packages. labels Nov 28, 2025
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octo-sts bot commented Nov 28, 2025 •
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🩹 Build Failed: Patch Application Failed

Hunk #1 FAILED at 34. 1 out of 1 hunk FAILED -- saving rejects to file modules/nextflow/build.gradle.rej

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Category Details
Build System melange
Failure Point patch step - applying logback.patch to modules/nextflow/build.gradle

Root Cause Analysis 🔍

The patch file 'logback.patch' could not be applied to the target file 'modules/nextflow/build.gradle' at line 34. This indicates that the patch was created for a different version of the file than what is currently checked out (tag v25.10.2), or the file has been modified in a way that makes the patch incompatible. The patch hunk failed to match the expected context in the target file.

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@octo-sts octo-sts bot added the ai/skip-comment Stop AI from commenting on PR label Nov 28, 2025
@octo-sts octo-sts bot changed the title nextflow/25.10.1 package update nextflow/25.10.2 package update Nov 28, 2025
@octo-sts octo-sts bot removed P1 This label indicates our scanning found High, Medium or Low CVEs for these packages. ai/skip-comment Stop AI from commenting on PR labels Nov 28, 2025
@octo-sts octo-sts bot force-pushed the staging-update-bot/nextflow.yaml branch from 3daf3b2 to 6ae9fc5 Compare November 28, 2025 23:03
@octo-sts octo-sts bot added the ai/skip-comment Stop AI from commenting on PR label Nov 28, 2025
@OddBloke OddBloke self-assigned this Dec 1, 2025
staging-update-bot and others added 3 commits December 1, 2025 11:55
@OddBloke OddBloke force-pushed the staging-update-bot/nextflow.yaml branch from 6ae9fc5 to e1579c7 Compare December 1, 2025 16:58
@octo-sts octo-sts bot added bincapz/pass bincapz/pass Bincapz (aka. malcontent) scan didn't detect any CRITICALs on the scanned packages. approver-bot/manual-review-needed manual/review-needed staging-approver-bot/manual-review-needed labels Dec 1, 2025
@OddBloke OddBloke requested a review from a team December 1, 2025 17:09
@OddBloke OddBloke enabled auto-merge December 1, 2025 17:09
@OddBloke OddBloke merged commit 5c908b1 into main Dec 1, 2025
24 checks passed
@OddBloke OddBloke deleted the staging-update-bot/nextflow.yaml branch December 1, 2025 19:28
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@AmberArcadia AmberArcadia AmberArcadia approved these changes

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@OddBloke OddBloke

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ai/skip-comment Stop AI from commenting on PR approver-bot/manual-review-needed automated pr bincapz/pass bincapz/pass Bincapz (aka. malcontent) scan didn't detect any CRITICALs on the scanned packages. manual/review-needed nextflow request-version-update request for a newer version of a package staging-approver-bot/manual-review-needed

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@AmberArcadia @OddBloke