Release 1.3.0, update standard to 0.10 #117
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name: Run code tests on push and pull requests | |
on: | |
push: | |
pull_request: | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
jobs: | |
tests: | |
name: Code tests (Python ${{ matrix.python-version }}, ${{ matrix.os }}) | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: ["ubuntu-latest"] | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
submodules: true | |
lfs: true | |
- uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
python-version: ${{ matrix.python-version }} | |
activate-environment: test | |
environment-file: .github/requirements.yml | |
auto-activate-base: false | |
channels: conda-forge | |
- shell: bash -l {0} | |
run: | | |
conda info | |
conda list | |
- name: Lint | |
shell: bash -l {0} | |
run: | | |
python -m flake8 src --exclude src/nifti_mrs/standard | |
- name: Run pytest | |
shell: bash -l {0} | |
run: | | |
pip install . | |
pytest -k "not with_fsl_mrs" tests | |
conda install -c conda-forge -c defaults \ | |
-c https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/ \ | |
fsl_mrs | |
pip install . | |
pytest -k "with_fsl_mrs" tests | |