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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 6

Repositories

Showing 10 of 79 repositories
  • npg_tracking Public

    WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

    wtsi-npg/npg_tracking’s past year of commit activity
    Perl 3 19 12 2 Updated Nov 28, 2024
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 1 GPL-3.0 8 1 0 Updated Nov 28, 2024
  • npg_notifications Public
    wtsi-npg/npg_notifications’s past year of commit activity
    Python 0 3 1 2 Updated Nov 28, 2024
  • npg_conda Public archive

    NPG Conda recipes and tools

    wtsi-npg/npg_conda’s past year of commit activity
    Shell 1 13 10 0 Updated Nov 27, 2024
  • extendo Public

    An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)

    wtsi-npg/extendo’s past year of commit activity
    Go 0 GPL-3.0 2 0 1 Updated Nov 26, 2024
  • sqyrrl Public

    Sqyrrl - an HTTP server for files hosted in iRODS

    wtsi-npg/sqyrrl’s past year of commit activity
    Go 0 GPL-3.0 4 2 4 Updated Nov 26, 2024
  • valet Public

    Automated data mangement for Oxford Nanopore DNA sequencing instruments

    wtsi-npg/valet’s past year of commit activity
    Go 2 GPL-3.0 4 4 1 Updated Nov 26, 2024
  • npg_ranger Public archive

    NGS data streaming (sam, bam, cram, vcf) - pre-production

    wtsi-npg/npg_ranger’s past year of commit activity
    JavaScript 4 5 27 0 Updated Nov 26, 2024
  • npg_seq_common Public

    Utilities for handling NGS data

    wtsi-npg/npg_seq_common’s past year of commit activity
    Perl 0 15 1 0 Updated Nov 26, 2024
  • npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    wtsi-npg/npg_seq_pipeline’s past year of commit activity
    Perl 9 17 23 7 Updated Nov 26, 2024
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