actions: Attempt to fix env file path. #77
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test CoverM with Setup-Miniconda From Marketplace | |
| on: [push, pull_request] | |
| jobs: | |
| miniconda_linux: | |
| name: Miniconda (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.11"] | |
| steps: | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ../coverm.yml | |
| channels: conda-forge,defaults,bioconda | |
| - name: Conda info | |
| shell: bash -el {0} | |
| run: conda info | |
| - name: Conda list | |
| shell: pwsh | |
| run: conda list | |
| - name: Run test | |
| run: | | |
| cargo test | |
| miniconda_osx: | |
| name: miniconda_osx (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["macos-latest"] | |
| python-version: ["3.11"] | |
| steps: | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ../coverm-osx.yml | |
| channels: conda-forge,defaults,bioconda | |
| - name: Conda info | |
| shell: bash -el {0} | |
| run: conda info | |
| - name: Conda list | |
| shell: pwsh | |
| run: conda list | |
| - name: Run test | |
| run: | | |
| cargo test -- --skip bwa_mem2 |