actions: Update to conda-incubator/setup-miniconda3.

wwood · May 23, 2024 · c0eb05f · c0eb05f
1 parent 90b053d
commit c0eb05f
Showing 1 changed file with 29 additions and 29 deletions.
diff --git a/.github/workflows/test-coverm.yml b/.github/workflows/test-coverm.yml
@@ -3,50 +3,50 @@ on: [push, pull_request]
 
 jobs:
  miniconda_linux:
- name: Miniconda ${{ matrix.os }}
+ name: Miniconda (${{ matrix.python-version }}, ${{ matrix.os }})
  runs-on: ${{ matrix.os }}
- defaults:
- run:
- shell: bash -l {0}
  strategy:
- matrix:
- os: ["ubuntu-latest"]
+ fail-fast: false
+ matrix:
+ os: ["ubuntu-latest"]
+ python-version: ["3.11"]
  steps:
- - uses: actions/checkout@v2
- - uses: conda-incubator/setup-miniconda@v2
+ - uses: conda-incubator/setup-miniconda@v3
  with:
- activate-environment: test
+ auto-update-conda: true
+ python-version: ${{ matrix.python-version }}
  environment-file: coverm.yml
- auto-activate-base: false
- mamba-version: "*"
  channels: conda-forge,defaults,bioconda
- - run: |
- conda info
- conda list
+ - name: Conda info
+ shell: bash -el {0}
+ run: conda info
+ - name: Conda list
+ shell: pwsh
+ run: conda list
  - name: Run test
  run: |
  cargo test
  miniconda_osx:
- name: Miniconda ${{ matrix.os }}
+ name: miniconda_osx (${{ matrix.python-version }}, ${{ matrix.os }})
  runs-on: ${{ matrix.os }}
- defaults:
- run:
- shell: bash -l {0}
  strategy:
- matrix:
- os: ["macos-latest"]
+ fail-fast: false
+ matrix:
+ os: ["macos-latest"]
+ python-version: ["3.11"]
  steps:
- - uses: actions/checkout@v2
- - uses: conda-incubator/setup-miniconda@v2
+ - uses: conda-incubator/setup-miniconda@v3
  with:
- activate-environment: test
+ auto-update-conda: true
+ python-version: ${{ matrix.python-version }}
  environment-file: coverm-osx.yml
- auto-activate-base: false
- mamba-version: "*"
  channels: conda-forge,defaults,bioconda
- - run: |
- conda info
- conda list
+ - name: Conda info
+ shell: bash -el {0}
+ run: conda info
+ - name: Conda list
+ shell: pwsh
+ run: conda list
  - name: Run test
  run: |
-  cargo test -- --skip bwa_mem2
+ cargo test -- --skip bwa_mem2