Pinned Loading

1. ClonalFrameML ClonalFrameML Public

   ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

   C++ 108 27

2. BactDating BactDating Public

   Bayesian inference of ancestral dates on bacterial phylogenetic trees

   R 84 17

3. TransPhylo TransPhylo Public

   Reconstruction of transmission trees using genomic data

   R 60 22

4. caitiecollins/treeWAS caitiecollins/treeWAS Public

   treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes

   R 95 19

5. ansariazim/treeBreaker ansariazim/treeBreaker Public

   Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree

   C 25 3

6. mrc-ide/skygrowth mrc-ide/skygrowth Public

   Phylodynamic inference

   R 18 5