This is an R package for performing MetaSTAAR procedure in whole-genome sequencing studies.
MetaSTAAR is an R package for performing Meta-analysis of variant-Set Test for Association using Annotation infoRmation (MetaSTAAR) procedure in whole-genome sequencing (WGS) studies.
R (recommended version >= 3.5.1)
For optimal computational performance, it is recommended to use an R version configured with the Intel Math Kernel Library (or other fast BLAS/LAPACK libraries). See the instructions on building R with Intel MKL.
MetaSTAAR links to R packages Rcpp, RcppArmadillo and STAAR, and also imports R packages Rcpp, STAAR, Matrix, dplyr, expm, MASS. These dependencies should be installed before installing MetaSTAAR.
library(devtools)
devtools::install_github("xihaoli/MetaSTAAR",ref="main")
Please see the MetaSTAAR user manual for detailed usage of MetaSTAAR package.
The current version is 0.9.6 (August 3, 2022).
This software is licensed under GPLv3.