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coPylot

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coPylot is a python app to control the lightsheet microscopes we build here at @czbiohub . Support for controling other microscopes planned to be added.

It can be started up by running copylot/gui/gui.py.

Installation

Using an environment manager is highly recommended. Instructions below using Anaconda but you can pick your favorite environment manager and do not forget to have pip.

Clone coPylot Repository

git clone https://github.com/royerlab/coPylot.git

Create Conda Environment and Install coPylot

We currently have no release on pypi, so you can follow the steps below to install editable version of coPylot with help of pip:

conda create -n coPylot python=3.9
conda activate coPylot
pip install -e .

Documentation

coPylot documentation can be found here.

Contributing

All contributions are welcome here! Please take a look at our contributing guideline first.

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  • Python 61.1%
  • Jupyter Notebook 38.9%