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In the lab
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In the lab
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Achievements

Achievement: StarstruckAchievement: Pair ExtraordinaireAchievement: YOLOAchievement: Public SponsorAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: StarstruckAchievement: Pair ExtraordinaireAchievement: YOLOAchievement: Public SponsorAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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y9c/README.md

Bioinformatics pipelines

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  1. cfutils Public

    🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.

    Python 23 3

  2. cutseq Public

    ✂️ Trim sequencing adapters from NGS data automatically

    Python 14

  3. mpileup Public

    extract nucleotide/read counts at user specific loci from multiple bam files

    Rust 2

  4. cpup Public

    Convert mpileup format to base count tsv table

    C++ 3

  5. hey Public

    Some useful / useless commands

    Go 2

  6. biodart Public

    🔬 A dart package for bioinformatics

    Dart 1

552 contributions in the last year

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Activity overview

Contributed to y9c/hey, y9c/m6A-CAMseq, y9c/cutseq and 23 other repositories
Loading A graph representing y9c's contributions from May 12, 2024 to May 13, 2025. The contributions are 97% commits, 2% issues, 1% pull requests, 0% code review.

Contribution activity

May 2025

Created 67 commits in 6 repositories
Created 1 repository

Created an issue in samtools/samtools that received 3 comments

Markdup does not deal with multiple mapped reads in a correct way.

The samtools markdup command, by default, ignores secondary alignments. This behavior can lead to inaccuracies when processing reads that map to mu…

3 comments
Opened 3 other issues in 2 repositories
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