Adding Docker support for CaffeOnSpark

docker/README.md

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+# CaffeOnSpark Standalone Docker
+
+Dockerfiles for both CPU and GPU builds are available in `standalone` folder. To use the CPU only version use the commands given. A GPU version of docker can be run using the command [`nvidia-docker`](https://github.com/NVIDIA/nvidia-docker) instead of `docker` using the `standalone/gpu` folder. 
+
+Dockerfiles for CPU build is provided in `standalone/cpu` folder. The image can be built by running:
+```
+docker build -t caffeonspark:cpu standalone/cpu
+```
+After the image is built, use `docker images` to validate.
+
+## Launching CaffeOnSpark container
+Hadoop and Spark are essential requirements for CaffeOnSpark. To ensure that both process runs flawless, we have included `standalone/cpu/config/bootstrap.sh` script which must be run everytime the container is started.
+
+To launch a container running CaffeOnSpark please use:
+```
+docker run -it caffeonspark:cpu /etc/bootstrap.sh -bash
+```
+
+Now you have a working environment with CaffeOnSpark.
+
+To verify installation, please follow [GetStarted_yarn](https://github.com/yahoo/CaffeOnSpark/wiki/GetStarted_yarn) guide from `Step 7`.

docker/standalone/cpu/Dockerfile

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+# Copyright 2016 Yahoo Inc.
+# Licensed under the terms of the Apache 2.0 license.
+# Please see LICENSE file in the project root for terms.
+#
+# This file is the dockerfile to setup caffeonspark cpu standalone version.
+
+FROM ubuntu:14.04
+
+RUN apt-get update && apt-get install -y software-properties-common
+RUN add-apt-repository ppa:openjdk-r/ppa
+RUN apt-get update && apt-get install -y --no-install-recommends \
+ build-essential \
+ vim \
+ cmake \
+ git \
+ wget \
+ libatlas-base-dev \
+ libboost-all-dev \
+ libgflags-dev \
+ libgoogle-glog-dev \
+ libhdf5-serial-dev \
+ libleveldb-dev \
+ liblmdb-dev \
+ libopencv-dev \
+ libprotobuf-dev \
+ libsnappy-dev \
+ protobuf-compiler \
+ python-dev \
+ python-numpy \
+ python-pip \
+ python-scipy \
+ maven \
+ unzip \
+ zip \
+ unzip \
+ libopenblas-dev \
+ openssh-server \
+ openssh-client \
+ libopenblas-dev \
+ libboost-all-dev \
+ openjdk-8-jdk
+
+RUN rm -rf /var/lib/apt/lists/*
+
+
+# Passwordless SSH
+RUN ssh-keygen -y -q -N "" -t dsa -f /etc/ssh/ssh_host_dsa_key
+RUN ssh-keygen -y -q -N "" -t rsa -f /etc/ssh/ssh_host_rsa_key
+RUN ssh-keygen -q -N "" -t rsa -f /root/.ssh/id_rsa
+RUN cp /root/.ssh/id_rsa.pub ~/.ssh/authorized_keys
+
+
+# Apache Hadoop and Spark section
+RUN wget http://apache.mirrors.tds.net/hadoop/common/hadoop-2.6.4/hadoop-2.6.4.tar.gz
+RUN wget http://archive.apache.org/dist/spark/spark-1.6.0/spark-1.6.0-bin-hadoop2.6.tgz
+
+RUN gunzip hadoop-2.6.4.tar.gz
+RUN gunzip spark-1.6.0-bin-hadoop2.6.tgz
+RUN tar -xf hadoop-2.6.4.tar
+RUN tar -xf spark-1.6.0-bin-hadoop2.6.tar
+
+RUN sudo cp -r hadoop-2.6.4 /usr/local/hadoop
+RUN sudo cp -r spark-1.6.0-bin-hadoop2.6 /usr/local/spark
+
+RUN rm hadoop-2.6.4.tar spark-1.6.0-bin-hadoop2.6.tar
+RUN rm -rf hadoop-2.6.4/ spark-1.6.0-bin-hadoop2.6/
+
+RUN sudo mkdir -p /usr/local/hadoop/hadoop_data/hdfs/namenode
+RUN sudo mkdir -p /usr/local/hadoop/hadoop_data/hdfs/datanode
+
+# Environment variables
+ENV JAVA_HOME /usr/lib/jvm/java-1.8.0-openjdk-amd64
+ENV HADOOP_HOME=/usr/local/hadoop
+ENV SPARK_HOME=/usr/local/spark
+ENV PATH $PATH:$JAVA_HOME/bin
+ENV PATH $PATH:$HADOOP_HOME/bin
+ENV PATH $PATH:$HADOOP_HOME/sbin
+ENV PATH $PATH:$SPARK_HOME/bin
+ENV PATH $PATH:$SPARK_HOME/sbin
+ENV HADOOP_MAPRED_HOME /usr/local/hadoop
+ENV HADOOP_COMMON_HOME /usr/local/hadoop
+ENV HADOOP_HDFS_HOME /usr/local/hadoop
+ENV HADOOP_CONF_DIR /usr/local/hadoop/etc/hadoop
+ENV YARN_HOME /usr/local/hadoop
+ENV HADOOP_COMMON_LIB_NATIVE_DIR /usr/local/hadoop/lib/native
+ENV HADOOP_OPTS "-Djava.library.path=$HADOOP_HOME/lib"
+
+# Clone CaffeOnSpark
+ENV CAFFE_ON_SPARK=/opt/CaffeOnSpark
+WORKDIR $CAFFE_ON_SPARK
+RUN git clone https://github.com/yahoo/CaffeOnSpark.git . --recursive
+
+# Some of the Hadoop part extracted from "https://hub.docker.com/r/sequenceiq/hadoop-docker/~/dockerfile/"
+RUN mkdir $HADOOP_HOME/input
+RUN cp $HADOOP_HOME/etc/hadoop/*.xml $HADOOP_HOME/input
+RUN cd /usr/local/hadoop/input
+
+# Copy .xml files.
+RUN cp ${CAFFE_ON_SPARK}/scripts/*.xml ${HADOOP_HOME}/etc/hadoop
+
+# Format namenode and finish hadoop, spark installations.
+RUN $HADOOP_HOME/bin/hdfs namenode -format
+
+RUN ls /root/.ssh/
+ADD config/ssh_config /root/.ssh/config
+RUN chmod 600 /root/.ssh/config
+RUN chown root:root /root/.ssh/config
+
+ADD config/bootstrap.sh /etc/bootstrap.sh
+RUN chown root:root /etc/bootstrap.sh
+RUN chmod 700 /etc/bootstrap.sh
+
+ENV BOOTSTRAP /etc/bootstrap.sh
+
+RUN sed -i '/^export JAVA_HOME/ s:.*:export JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-amd64\nexport HADOOP_HOME=/usr/local/hadoop\n:' $HADOOP_HOME/etc/hadoop/hadoop-env.sh
+RUN sed -i '/^export HADOOP_CONF_DIR/ s:.*:export HADOOP_CONF_DIR=/usr/local/hadoop/etc/hadoop/:' $HADOOP_HOME/etc/hadoop/hadoop-env.sh
+
+# workingaround docker.io build error
+RUN ls -la /usr/local/hadoop/etc/hadoop/*-env.sh
+RUN chmod +x /usr/local/hadoop/etc/hadoop/*-env.sh
+RUN ls -la /usr/local/hadoop/etc/hadoop/*-env.sh
+
+# fix the 254 error code
+RUN sed -i "/^[^#]*UsePAM/ s/.*/#&/" /etc/ssh/sshd_config
+RUN echo "UsePAM no" >> /etc/ssh/sshd_config
+RUN echo "Port 2122" >> /etc/ssh/sshd_config
+
+RUN service ssh start && $HADOOP_HOME/etc/hadoop/hadoop-env.sh && $HADOOP_HOME/sbin/start-dfs.sh && $HADOOP_HOME/bin/hdfs dfs -mkdir -p /user/root
+RUN service ssh start && $HADOOP_HOME/etc/hadoop/hadoop-env.sh && $HADOOP_HOME/sbin/start-dfs.sh && $HADOOP_HOME/bin/hdfs dfs -put $HADOOP_HOME/etc/hadoop/ input
+
+CMD ["/etc/bootstrap.sh", "-bash"]
+
+# Hdfs ports
+EXPOSE 50010 50020 50070 50075 50090 8020 9000
+# Mapred ports
+EXPOSE 10020 19888
+#Yarn ports
+EXPOSE 8030 8031 8032 8033 8040 8042 8088
+#Other ports
+EXPOSE 49707 2122
+
+
+# Continue with CaffeOnSpark build.
+# ENV CAFFE_ON_SPARK=/opt/CaffeOnSpark
+WORKDIR $CAFFE_ON_SPARK
+# RUN git clone https://github.com/yahoo/CaffeOnSpark.git . --recursive
+RUN cp caffe-public/Makefile.config.example caffe-public/Makefile.config
+RUN echo "INCLUDE_DIRS += ${JAVA_HOME}/include" >> caffe-public/Makefile.config
+RUN sed -i "s/# CPU_ONLY := 1/CPU_ONLY := 1/g" caffe-public/Makefile.config
+RUN sed -i "s|CUDA_DIR := /usr/local/cuda|# CUDA_DIR := /usr/local/cuda|g" caffe-public/Makefile.config
+RUN sed -i "s|CUDA_ARCH :=|# CUDA_ARCH :=|g" caffe-public/Makefile.config
+RUN sed -i "s|BLAS := atlas|BLAS := open|g" caffe-public/Makefile.config
+RUN sed -i "s|TEST_GPUID := 0|# TEST_GPUID := 0|g" caffe-public/Makefile.config
+
+RUN make build
+
+ENV LD_LIBRARY_PATH $LD_LIBRARY_PATH:$CAFFE_ON_SPARK/caffe-public/distribute/lib:$CAFFE_ON_SPARK/caffe-distri/distribute/lib
+
+WORKDIR /root

docker/standalone/cpu/config/bootstrap.sh

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+#!/bin/bash
+# Copyright 2016 Yahoo Inc.
+# Licensed under the terms of the Apache 2.0 license.
+# Please see LICENSE file in the project root for terms.
+#
+# This script starts hadoop dfs and yarn while the docker container is started.
+
+: ${HADOOP_PREFIX:=/usr/local/hadoop}
+
+$HADOOP_PREFIX/etc/hadoop/hadoop-env.sh
+
+rm /tmp/*.pid
+
+# installing libraries if any - (resource urls added comma separated to the ACP system variable)
+cd $HADOOP_PREFIX/share/hadoop/common ; for cp in ${ACP//,/ }; do echo == $cp; curl -LO $cp ; done; cd -
+
+# adding necessary paths to environment variables (FIXME: These are already in Dockerfile, but does not work. So giving them explicitly.)
+export PATH=$PATH:$SPARK_HOME/bin
+export PATH=$PATH:$HADOOP_HOME/bin
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CAFFE_ON_SPARK/caffe-public/distribute/lib:$CAFFE_ON_SPARK/caffe-distri/distribute/lib
+
+service ssh start
+$HADOOP_PREFIX/sbin/start-dfs.sh
+$HADOOP_PREFIX/sbin/start-yarn.sh
+
+if [[ $1 == "-d" ]]; then
+ while true; do sleep 1000; done
+fi
+
+if [[ $1 == "-bash" ]]; then
+ /bin/bash
+fi

docker/standalone/cpu/config/ssh_config

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+# Copyright 2016 Yahoo Inc.
+# Licensed under the terms of the Apache 2.0 license.
+# Please see LICENSE file in the project root for terms.
+#
+# This file creates user specific ssh configuration 
+#
+Host *
+ UserKnownHostsFile /dev/null
+ StrictHostKeyChecking no
+ LogLevel quiet
+ Port 2122

docker/standalone/gpu/Dockerfile

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+# Copyright 2016 Yahoo Inc.
+# Licensed under the terms of the Apache 2.0 license.
+# Please see LICENSE file in the project root for terms.
+#
+# This file is the dockerfile to setup caffeonspark cpu standalone version.
+
+FROM nvidia/cuda:7.5-cudnn5-devel-ubuntu14.04
+
+RUN apt-get update && apt-get install -y software-properties-common
+RUN add-apt-repository ppa:openjdk-r/ppa
+RUN apt-get update && apt-get install -y --no-install-recommends \
+ build-essential \
+ vim \
+ cmake \
+ git \
+ wget \
+ libatlas-base-dev \
+ libboost-all-dev \
+ libgflags-dev \
+ libgoogle-glog-dev \
+ libhdf5-serial-dev \
+ libleveldb-dev \
+ liblmdb-dev \
+ libopencv-dev \
+ libprotobuf-dev \
+ libsnappy-dev \
+ protobuf-compiler \
+ python-dev \
+ python-numpy \
+ python-pip \
+ python-scipy \
+ maven \
+ unzip \
+ zip \
+ unzip \
+ libopenblas-dev \
+ openssh-server \
+ openssh-client \
+ libopenblas-dev \
+ libboost-all-dev \
+ openjdk-8-jdk
+
+RUN rm -rf /var/lib/apt/lists/*
+
+
+# Passwordless SSH
+RUN ssh-keygen -y -q -N "" -t dsa -f /etc/ssh/ssh_host_dsa_key
+RUN ssh-keygen -y -q -N "" -t rsa -f /etc/ssh/ssh_host_rsa_key
+RUN ssh-keygen -q -N "" -t rsa -f /root/.ssh/id_rsa
+RUN cp /root/.ssh/id_rsa.pub ~/.ssh/authorized_keys
+
+
+# Apache Hadoop and Spark section
+RUN wget http://apache.mirrors.tds.net/hadoop/common/hadoop-2.6.4/hadoop-2.6.4.tar.gz
+RUN wget http://archive.apache.org/dist/spark/spark-1.6.0/spark-1.6.0-bin-hadoop2.6.tgz
+
+RUN gunzip hadoop-2.6.4.tar.gz
+RUN gunzip spark-1.6.0-bin-hadoop2.6.tgz
+RUN tar -xf hadoop-2.6.4.tar
+RUN tar -xf spark-1.6.0-bin-hadoop2.6.tar
+
+RUN sudo cp -r hadoop-2.6.4 /usr/local/hadoop
+RUN sudo cp -r spark-1.6.0-bin-hadoop2.6 /usr/local/spark
+
+RUN rm hadoop-2.6.4.tar spark-1.6.0-bin-hadoop2.6.tar
+RUN rm -rf hadoop-2.6.4/ spark-1.6.0-bin-hadoop2.6/
+
+RUN sudo mkdir -p /usr/local/hadoop/hadoop_data/hdfs/namenode
+RUN sudo mkdir -p /usr/local/hadoop/hadoop_data/hdfs/datanode
+
+# Environment variables
+ENV JAVA_HOME /usr/lib/jvm/java-1.8.0-openjdk-amd64
+ENV HADOOP_HOME=/usr/local/hadoop
+ENV SPARK_HOME=/usr/local/spark
+ENV PATH $PATH:$JAVA_HOME/bin
+ENV PATH $PATH:$HADOOP_HOME/bin
+ENV PATH $PATH:$HADOOP_HOME/sbin
+ENV PATH $PATH:$SPARK_HOME/bin
+ENV PATH $PATH:$SPARK_HOME/sbin
+ENV HADOOP_MAPRED_HOME /usr/local/hadoop
+ENV HADOOP_COMMON_HOME /usr/local/hadoop
+ENV HADOOP_HDFS_HOME /usr/local/hadoop
+ENV HADOOP_CONF_DIR /usr/local/hadoop/etc/hadoop
+ENV YARN_CONF_DIR /usr/local/hadoop/etc/hadoop
+ENV YARN_HOME /usr/local/hadoop
+ENV HADOOP_COMMON_LIB_NATIVE_DIR /usr/local/hadoop/lib/native
+ENV HADOOP_OPTS "-Djava.library.path=$HADOOP_HOME/lib"
+
+# Clone CaffeOnSpark
+ENV CAFFE_ON_SPARK=/opt/CaffeOnSpark
+WORKDIR $CAFFE_ON_SPARK
+RUN git clone https://github.com/yahoo/CaffeOnSpark.git . --recursive
+
+# Some of the Hadoop part extracted from "https://hub.docker.com/r/sequenceiq/hadoop-docker/~/dockerfile/"
+RUN mkdir $HADOOP_HOME/input
+RUN cp $HADOOP_HOME/etc/hadoop/*.xml $HADOOP_HOME/input
+RUN cd /usr/local/hadoop/input
+
+# Copy .xml files.
+RUN cp ${CAFFE_ON_SPARK}/scripts/*.xml ${HADOOP_HOME}/etc/hadoop
+
+# Format namenode and finish hadoop, spark installations.
+RUN $HADOOP_HOME/bin/hdfs namenode -format
+
+RUN ls /root/.ssh/
+ADD config/ssh_config /root/.ssh/config
+RUN chmod 600 /root/.ssh/config
+RUN chown root:root /root/.ssh/config
+
+ADD config/bootstrap.sh /etc/bootstrap.sh
+RUN chown root:root /etc/bootstrap.sh
+RUN chmod 700 /etc/bootstrap.sh
+
+ENV BOOTSTRAP /etc/bootstrap.sh
+
+RUN sed -i '/^export JAVA_HOME/ s:.*:export JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-amd64\nexport HADOOP_HOME=/usr/local/hadoop\n:' $HADOOP_HOME/etc/hadoop/hadoop-env.sh
+RUN sed -i '/^export HADOOP_CONF_DIR/ s:.*:export HADOOP_CONF_DIR=/usr/local/hadoop/etc/hadoop/:' $HADOOP_HOME/etc/hadoop/hadoop-env.sh
+
+# workingaround docker.io build error
+RUN ls -la /usr/local/hadoop/etc/hadoop/*-env.sh
+RUN chmod +x /usr/local/hadoop/etc/hadoop/*-env.sh
+RUN ls -la /usr/local/hadoop/etc/hadoop/*-env.sh
+
+# fix the 254 error code
+RUN sed -i "/^[^#]*UsePAM/ s/.*/#&/" /etc/ssh/sshd_config
+RUN echo "UsePAM no" >> /etc/ssh/sshd_config
+RUN echo "Port 2122" >> /etc/ssh/sshd_config
+
+RUN service ssh start && $HADOOP_HOME/etc/hadoop/hadoop-env.sh && $HADOOP_HOME/sbin/start-dfs.sh && $HADOOP_HOME/bin/hdfs dfs -mkdir -p /user/root
+RUN service ssh start && $HADOOP_HOME/etc/hadoop/hadoop-env.sh && $HADOOP_HOME/sbin/start-dfs.sh && $HADOOP_HOME/bin/hdfs dfs -put $HADOOP_HOME/etc/hadoop/ input
+
+CMD ["/etc/bootstrap.sh", "-bash"]
+
+# Hdfs ports
+EXPOSE 50010 50020 50070 50075 50090 8020 9000
+# Mapred ports
+EXPOSE 10020 19888
+#Yarn ports
+EXPOSE 8030 8031 8032 8033 8040 8042 8088
+#Other ports
+EXPOSE 49707 2122
+
+# Continue with CaffeOnSpark build.
+# ENV CAFFE_ON_SPARK=/opt/CaffeOnSpark
+WORKDIR $CAFFE_ON_SPARK
+# RUN git clone https://github.com/yahoo/CaffeOnSpark.git . --recursive
+RUN cp caffe-public/Makefile.config.example caffe-public/Makefile.config
+RUN echo "INCLUDE_DIRS += ${JAVA_HOME}/include" >> caffe-public/Makefile.config
+#RUN sed -i "s/# USE_CUDNN := 1/USE_CUDNN := 1/g" caffe-public/Makefile.config
+RUN sed -i "s|BLAS := atlas|BLAS := open|g" caffe-public/Makefile.config
+
+RUN make build
+
+ENV LD_LIBRARY_PATH $LD_LIBRARY_PATH:$CAFFE_ON_SPARK/caffe-public/distribute/lib:$CAFFE_ON_SPARK/caffe-distri/distribute/lib
+
+WORKDIR /root