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Use the new from_dataset method to initialize objects in examples. #123

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merged 9 commits into from
Jun 28, 2022
Merged

Use the new from_dataset method to initialize objects in examples. #123

merged 9 commits into from
Jun 28, 2022

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arokem
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@arokem arokem commented Jun 23, 2022 •
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Follow up on #121.

TODO:

  • Find all the examples that currently load these datasets in a few steps.
  • It's nice to have this method, but we will also want there to be an example that shows how to load your own data from CSV files step by step.
  • Mention somewhere that these CSVs are generated and point to pyAFQ and file-format spec.

@arokem arokem changed the title WIP: Use the new from_dataset method to initialize objects in examples. Use the new from_dataset method to initialize objects in examples. Jun 27, 2022
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arokem commented Jun 27, 2022

This is ready for a review.

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There are some flake8 errors on build (3.9), mostly due to unused imports.

richford
richford requested changes Jun 28, 2022
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LGTM, with one small comment. There is an explanation that worked well with the afqdata namedtumple returned by load_sarica but not with the AFQDataset instance.

examples/plot_als_classification.py Outdated Show resolved Hide resolved
@arokem @richford
Update description "namedtuple" => "AFQDataset"
18df3f9 
Co-authored-by: Adam Richie-Halford <richford@users.noreply.github.com>
@richford richford merged commit ec514b0 into yeatmanlab:main Jun 28, 2022
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