modify endpoint rois further

yeatmanlab · Aug 24, 2023 · 1fc0c06 · 1fc0c06
1 parent edc77e6
commit 1fc0c06
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Showing 2 changed files with 26 additions and 7 deletions.
diff --git a/AFQ/api/bundle_dict.py b/AFQ/api/bundle_dict.py
@@ -762,7 +762,8 @@ def _gen(self, bundle_name):
             self._dict["pARC_L"] = {
                 "include": [self.templates["SLFt_roi2_L"]],
                 "exclude": [self.templates["SLF_roi1_L"]],
-                "start": self.templates["LH_Parietal"],
+                "start": self.templates["pARC_L_start"],
+                "end": self.templates["VOF_box_small_L"],
                 "primary_axis": 2,
                 "primary_axis_percentage": 40,
                 "cross_midline": False
@@ -771,21 +772,24 @@ def _gen(self, bundle_name):
             self._dict["pARC_R"] = {
                 "include": [self.templates["SLFt_roi2_R"]],
                 "exclude": [self.templates["SLF_roi1_R"]],
-                "start": self.templates["RH_Parietal"],
+                "start": self.templates["pARC_R_start"],
+                "end": self.templates["VOF_box_small_R"],
                 "primary_axis": 2,
                 "primary_axis_percentage": 40,
                 "cross_midline": False
             }
         elif bundle_name == "VOF_L":
             self._dict["VOF_L"] = {
-                "end": self.templates["VOF_box_L"],
+                "start": self.templates["VOF_L_start"],
+                "end": self.templates["VOF_box_small_L"],
                 "primary_axis": 2,
                 "primary_axis_percentage": 40,
                 "cross_midline": False
             }
         elif bundle_name == "VOF_R":
             self._dict["VOF_R"] = {
-                "end": self.templates["VOF_box_R"],
+                "start": self.templates["VOF_R_start"],
+                "end": self.templates["VOF_box_small_R"],
                 "primary_axis": 2,
                 "primary_axis_percentage": 40,
                 "cross_midline": False

diff --git a/AFQ/data/fetch.py b/AFQ/data/fetch.py
@@ -801,7 +801,12 @@ def read_or_templates(as_img=True, resample_to=False):
     "OR_leftV1.nii.gz",
     "OR_leftThal.nii.gz",
     "OR_left_roi3.nii.gz",
-    "VOF_box_small_L.nii.gz"
+    "VOF_box_small_L.nii.gz",
+    "VOF_box_small_R.nii.gz",
+    "pARC_L_start.nii.gz",
+    "VOF_L_start.nii.gz",
+    "pARC_R_start.nii.gz",
+    "VOF_R_start.nii.gz",
 ]
 
 more_pediatric_remote_fnames = [
@@ -811,7 +816,12 @@ def read_or_templates(as_img=True, resample_to=False):
     "42120489",
     "42120492",
     "42120495",
-    "42121626"
+    "42121695",
+    "42121698"
+    "42121650",
+    "42121656",
+    "42121653",
+    "42121659"
 ]
 
 more_pediatric_md5_hashes = [
@@ -821,7 +831,12 @@ def read_or_templates(as_img=True, resample_to=False):
     "bc6d4f880d3eb281358af1c764779704",
     "a3b6a7be067aa12af273482baee1498d",
     "f035813314960eb91f3a4dae508a68e5",
-    "8ffbd65ae986c8196b7776fe98e66722"
+    "5481d26816ecb612c2514a03cc3a5ef4",
+    "e4e34212b813dd2c5c156727a45c59a7"
+    "a04d645bbc3ff4be412c9efbcc3d1ff2",
+    "4714e00a31cbee58cfd86bd935c36f43",
+    "6205fe06ab28586179245d294d9c5c7a",
+    "5d573e948706e5de5f1b27cddcfc0e08"
 ]
 
 fetch_more_pediatric_templates = _make_reusable_fetcher(