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In a run of pyAFQ that I did yesterday, I get a few warnings raised and lots of tqdm progress bars, but no logs otherwise:
(afq) ➜ NKI pyAFQ ./afq_config.toml Loading AFQ libraries... INFO:pyAFQ:Your use of pyAFQ is being recorded using Google Analytics. For more information, please refer to the pyAFQ documentation: https://yeatmanlab.github.io/pyAFQ/usage.html#usage-tracking-with-google-analytics. To turn this off, use the `--notrack` flag when using the pyAFQ CLI 100%|███████████████████████████████| 172104/172104.0 [00:48<00:00, 3532.95it/s] 100%|███████████████████████████████| 209744/209744.0 [01:01<00:00, 3393.21it/s] 100%|█████████████████████████████████| 164266/164266 [1:16:54<00:00, 35.60it/s] WARNING:AFQ.api.seg:0 invalid streamlines removed 100%|███████████████████████████████████| 77070/77070 [00:13<00:00, 5528.98it/s] 100%|███████████████████████████████████| 75069/75069 [00:11<00:00, 6491.58it/s] 100%|███████████████████████████████████| 21284/21284 [00:06<00:00, 3065.88it/s] 100%|███████████████████████████████████| 19408/19408 [00:05<00:00, 3257.69it/s] 100%|██████████████████████████████████| 41860/41860 [00:04<00:00, 10412.55it/s] 100%|███████████████████████████████████| 34826/34826 [00:03<00:00, 9804.04it/s] 100%|███████████████████████████████████| 75223/75223 [00:31<00:00, 2380.06it/s] 100%|███████████████████████████████████| 77786/77786 [00:32<00:00, 2421.78it/s] 100%|███████████████████████████████████| 68736/68736 [00:59<00:00, 1159.66it/s] 100%|████████████████████████████████████| 73393/73393 [01:15<00:00, 978.39it/s] 100%|█████████████████████████████████| 100648/100648 [00:59<00:00, 1689.81it/s] 100%|███████████████████████████████████| 97667/97667 [00:51<00:00, 1889.75it/s] 100%|███████████████████████████████████| 80346/80346 [00:31<00:00, 2557.74it/s] 100%|███████████████████████████████████| 74406/74406 [00:29<00:00, 2550.86it/s] 100%|███████████████████████████████████| 41361/41361 [00:09<00:00, 4580.25it/s] 100%|███████████████████████████████████| 34049/34049 [00:08<00:00, 4247.91it/s] 100%|█████████████████████████████████| 389622/389622 [02:34<00:00, 2528.48it/s] 100%|█████████████████████████████████| 389622/389622 [00:56<00:00, 6835.59it/s] 100%|█████████████████████████████████| 389622/389622 [02:11<00:00, 2968.97it/s] 100%|█████████████████████████████████| 389622/389622 [00:55<00:00, 6960.80it/s] 100%|█████████████████████████████████| 389622/389622 [02:00<00:00, 3221.13it/s] 100%|█████████████████████████████████| 389622/389622 [04:38<00:00, 1400.66it/s] 100%|█████████████████████████████████| 389622/389622 [01:52<00:00, 3450.49it/s] 100%|█████████████████████████████████| 389622/389622 [01:35<00:00, 4060.58it/s] 100%|█████████████████████████████████| 201791/201791 [1:31:27<00:00, 36.78it/s] WARNING:AFQ.api.seg:0 invalid streamlines removed 100%|█████████████████████████████████| 101481/101481 [00:11<00:00, 8556.49it/s] 100%|███████████████████████████████████| 86635/86635 [00:10<00:00, 7890.55it/s] 100%|███████████████████████████████████| 23833/23833 [00:06<00:00, 3870.73it/s] 100%|███████████████████████████████████| 26218/26218 [00:06<00:00, 3853.42it/s] 100%|███████████████████████████████████| 39169/39169 [00:04<00:00, 8793.37it/s] 100%|███████████████████████████████████| 38036/38036 [00:04<00:00, 8833.33it/s] 100%|█████████████████████████████████| 104225/104225 [00:43<00:00, 2371.81it/s] 100%|█████████████████████████████████| 102053/102053 [00:39<00:00, 2569.93it/s] 100%|███████████████████████████████████| 96875/96875 [01:27<00:00, 1101.67it/s] 100%|████████████████████████████████████| 98825/98825 [01:40<00:00, 979.52it/s] 100%|█████████████████████████████████| 130512/130512 [01:04<00:00, 2016.38it/s] 100%|█████████████████████████████████| 127761/127761 [01:12<00:00, 1765.43it/s] 100%|█████████████████████████████████| 102347/102347 [00:37<00:00, 2745.74it/s] 100%|███████████████████████████████████| 91560/91560 [00:38<00:00, 2402.91it/s] 100%|███████████████████████████████████| 60763/60763 [00:15<00:00, 3976.49it/s] 100%|███████████████████████████████████| 47004/47004 [00:11<00:00, 4167.46it/s] 100%|█████████████████████████████████| 517567/517567 [03:26<00:00, 2511.48it/s] 100%|█████████████████████████████████| 517567/517567 [01:09<00:00, 7451.15it/s] 100%|█████████████████████████████████| 517567/517567 [03:12<00:00, 2686.45it/s] 100%|█████████████████████████████████| 517567/517567 [01:18<00:00, 6609.28it/s] 100%|█████████████████████████████████| 517567/517567 [02:45<00:00, 3131.37it/s] 100%|█████████████████████████████████| 517567/517567 [06:14<00:00, 1381.43it/s] 100%|█████████████████████████████████| 517567/517567 [02:41<00:00, 3207.02it/s] 100%|█████████████████████████████████| 517567/517567 [02:33<00:00, 3376.25it/s] WARNING:AFQ.api:To make plots in pyAFQ, you will need to install the relevant plotting software packages.You can do that by installing pyAFQ with `pip install AFQ[plot]` WARNING:AFQ.api:AFQ Browser is not installed, so AFQ Browswer instance cannot be assembled. AFQ Browser can be installed with: `pip install pyAFQ[afqbrowser]` or `pip install AFQ-Browser>=0.3`
Is that intentional?
The text was updated successfully, but these errors were encountered:
I think this is the default behavior of logging (to only show warnings and above), and can happen even when not using the command line.
Sorry, something went wrong.
Sets logging level to be a little bit more verbose for file saving.
4742f67
Addresses yeatmanlab#857
54b813b
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In a run of pyAFQ that I did yesterday, I get a few warnings raised and lots of tqdm progress bars, but no logs otherwise:
Is that intentional?
The text was updated successfully, but these errors were encountered: