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Tools for maintaining predefined membrane curvature in MD simulations
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yesint/EnCurv
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EnCurv method for maintaining membrane curvature in MD simulations. (c) Semen Yesylevskyy, 2020. yesint4@gmail.com The method is described here: http://dx.doi.org/10.1021/acs.jctc.0c00800 Please always cite this article when using EnCurv. How to install: --------------- 1) Get PLUMED source code (https://github.com/plumed/plumed2) 2) Copy *.cpp files to <plumed location>/src/colvar 3) Compile and install PLUMED as usual (see https://www.plumed.org/doc-v2.5/user-doc/html/_installation.html) How to run: ----------- Directories "example_AA" and "example_CG" contain full working examples for Gromacs using CHARMM36 and MARTINI force fields respectively These are pre-equilibrated DOPC bicelle. Gromacs have to be compiled accordingly with PLUMED support (see Plumed docs). The file plumed.dat contains all parameters related to EnCurv. To run an example: 1) gmx grompp -f md.mdp -p -c start_structure.gro -n 2) gmx mdrun -plumed plumed.dat
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