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Releases: yhoogstrate/fastafs

v1.6.0

21 Aug 12:27
5c4be12
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  • fastafs list now supports viewing running instances of the fastafs files
  • function lsfastafs() allows finding all fuse mounted fastafs instances/mointpoints by making use of the 'fastafs-file'-xattr (getfattr -n fastafs-file /mnt/fastafs/test)
  • Adds fastafs ps listing all mounted fastafs instances and their corresponding mountpoints (also that are not present in the 'database').

v1.5.0

02 Aug 08:49
3606202
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  • Supports mounting UCSC 2bit files onto the filesystem using FUSE (without using FASTAFS file(s))
    • Does not allow to mount DICT files as 2bit does not keep MD5 checksums
    • Requires c++-17 for several std::filesystem calls

v1.4.0

05 Jun 10:49
1acd3a5
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  • Changed SHA1 to MD5 hashes for BAM compatibility
  • Supports mounting samtools dict equivalent files
  • Hotfix for more than 255 M-blocks
  • Solves many warnings + various cleanups
  • Fixed some memleaks

v1.3.0

21 May 10:14
77725f6
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  • Supports Masked regions (and conversion to/from UCSC TwoBit files)

v1.2.0

07 May 14:46
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  • Full support for UCSC TwoBit files in fastafs cache (adding to db)

v1.1.1

30 Apr 15:23
c928d17
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  • Performance update for SHA1 calculation and ucsc2bit virtualization.

v1.0.0

11 Apr 11:24
ac8388c
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  • The file format has been re-specified, backwards incompatible with
    the test code. The fastafs to fasta projection has been enormously
    improved and is way and way faster.

v0.0.6

26 Oct 09:01
ca22808
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  • Improved sha1 support (in concordance with CRAM definition)
  • API updates, minor out-of-bound bug fixes and additional tests, CLI updates

v0.0.5

17 Jan 12:00
c68b7af
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  • fastafs mount argument -p/--padding works

v0.0.4

11 Jan 11:44
b2e1eb1
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  • fastafs mount provides appropriate file size attributes resulting in correct files
  • fastafs mount mount/dest path properly parsed