v1.10.0

2023-01-22

• v.10.0
• Better ninja/meson support
• Code clean-ups
• Restructured the chunked_reader class and subclasses according to
  the desgin patterns philisopy

v1.9.0

v1.9.0:

• Bugfix thanks to @Y4NG333 [out of bound checking fastafs version] #63

v1.8.1

v1.8.1

• More structured way of building using cmake and libfastafs.
• Improved building using meson / ninja

v1.8.0

• v1.8.0
• Support for zstd-seekable
• Support for protein sequences using 8-to-5 byte compression
• Object type for chunked/buffered file reading
• Requires libzstd (1.4.5 and above) as dependency
• Awesome and complex per-system-id & per-git-revision Python benchmark system 😎 which exports stats into the git tree

v1.7.5

v1.7.5:

• Added argument check -5/--md5sum to do file verification using md5sums as well
• Fixed error code returned after fastafs check --help

v1.7.4:

• Added argument cache --2bit to force 2bit compression when this gives suboptimal compression ratio's (needed for statistical analysis)

v1.7.3

2020-20-26  Youri Hoogstrate

   * v1.7.3
   * Small decoy function added for basic snakemake compatiblity

2020-02-04  Youri Hoogstrate

   * v1.7.2
   * Reduce file read syscalls and gain performance
   * Functional testing in python, for both view to stdout as mounting
   * Added templating for cleaner code
   * Auto conversion to fourbit if that is more efficient compression

v1.7.1

2020-02-01 Youri Hoogstrate

• v1.7.1
• Fixed an errornous syscall (when ls -l requests a certain xattr)
• Set chmods to 0555 to 0444

v1.7.0

• fastafs cache -o for custom output files and bypassing the config
• Random access subsequence retrieval diretly via filesystem: <mount>/seq/chr1:100-200
• Implements CRC32 checksums for whole-file integritity
• Converting to meson because of insane build times using cmake+make and re-building files that have not changed
• fastafs view|mount -m/--no-masking virtualises fasta files without masking (uppercase)
• Minor support for building with meson and ninja
• cmake template allows building for guix (+guix file provided)
• Changed requirement from c++17 on c++14 to avoid large compatibility issues
• Implements bitflags with corresponding class
• Implements fourbit (and automatically switches over if non ACTGUN chars are found
• Implements functions is_fasta_file, and is_ucsc2bit_file using file MAGIC
• Creates by FASTAFS files that are first flagged as incomplete, that are unflagged after conversion has completed
• MD5sums working for fourbit compressed sequences
• Implements fastafs cache -o to export to desired output fastafs file
• Adds compression type to fastafs list output
• More and improved testing, including file integrity detection

v1.6.2

• Rewritten argument parsing of fuse/mounting
• Added binary mount.fastafs only for mounting, without the toolkit, to use in /etc/fstab
• fastafs --version will now also output whether the binary was compiled as debug or release.

v1.6.1

• Adds process' pid to fastafs ps