Releases
v1.7.0
fastafs cache -o
for custom output files and bypassing the config
Random access subsequence retrieval diretly via filesystem: <mount>/seq/chr1:100-200
Implements CRC32 checksums for whole-file integritity
Converting to meson because of insane build times using cmake+make and re-building files that have not changed
fastafs view|mount -m/--no-masking
virtualises fasta files without masking (uppercase)
Minor support for building with meson and ninja
cmake template allows building for guix (+guix file provided)
Changed requirement from c++17 on c++14 to avoid large compatibility issues
Implements bitflags with corresponding class
Implements fourbit (and automatically switches over if non ACTGUN chars are found
Implements functions is_fasta_file
, and is_ucsc2bit_file
using file MAGIC
Creates by FASTAFS files that are first flagged as incomplete, that are unflagged after conversion has completed
MD5sums working for fourbit compressed sequences
Implements fastafs cache -o
to export to desired output fastafs file
Adds compression type to fastafs list
output
More and improved testing, including file integrity detection
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