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@yhoogstrate yhoogstrate released this 29 Jan 20:51
· 214 commits to master since this release
v1.7.0
c52232b
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Learn about vigilant mode.
  • fastafs cache -o for custom output files and bypassing the config
  • Random access subsequence retrieval diretly via filesystem: <mount>/seq/chr1:100-200
  • Implements CRC32 checksums for whole-file integritity
  • Converting to meson because of insane build times using cmake+make and re-building files that have not changed
  • fastafs view|mount -m/--no-masking virtualises fasta files without masking (uppercase)
  • Minor support for building with meson and ninja
  • cmake template allows building for guix (+guix file provided)
  • Changed requirement from c++17 on c++14 to avoid large compatibility issues
  • Implements bitflags with corresponding class
  • Implements fourbit (and automatically switches over if non ACTGUN chars are found
  • Implements functions is_fasta_file, and is_ucsc2bit_file using file MAGIC
  • Creates by FASTAFS files that are first flagged as incomplete, that are unflagged after conversion has completed
  • MD5sums working for fourbit compressed sequences
  • Implements fastafs cache -o to export to desired output fastafs file
  • Adds compression type to fastafs list output
  • More and improved testing, including file integrity detection
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