Code

Octree ghost zones — reloaded#2425

Code

Merged

munkm merged 65 commits intoyt-project:masteryt-project/yt:masterfrom cphyc:neighbour-searchcphyc/yt:neighbour-searchCopy head branch name to clipboardJul 19, 2020

+681-106

Commits

Commits on Jun 16, 2020

• Add support for fast neighbour search

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  333436c

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• More generic code

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  6ce0416

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• Remove useless variable on oct container

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• First working (not crashing version)

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Commits on Jun 17, 2020

• Does not work yet, but hey it compiles

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  ab4410e

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• Wiring cython code with ghost zones

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• Cleanup

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• First working (not crashing) version

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• Fix octree accessor

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• Forget about nan when doing gradients

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• Accept unyt_array as center

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• Gradient should be block order-aware

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• cAdd comments

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• Support reading boundaries between CPUs

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• Filling hydro with boundary information

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• Use Fortran ordering to read in for faster results

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• Working version?

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• Correct erroneous reference

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• Catch early bug

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• More explicit names

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• Correct discrepancy between .pxd and .pyx file

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• UNSURE ABOUT THIS ONE, REMOVE ME IF YOU HAVE WEIRD RESULTS

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• Read boundary regions as well

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• Cannot assume that keys are string by default (can be tuple)

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• Inform gradient about ordering

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• Use less ambiguous name

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• Use block_reorder to decide when transposing

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• ("index, "ones") should return data with units

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• Add unit test

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• Add new answer test

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• Move non-specific code into oct_container.pyx

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• Remove unused parent accessor

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• RAMSES octree is sparse, restore this

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• Update docstring

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• Only query fcoords w/o ghost zones

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• Assume periodicity

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• Add warning

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• Vastly simplify code

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• Remove useless import

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• Remove unused visitor

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• Remove useless method

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• Address comments

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  6fde2e5

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• Fix mistake

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• No need to format warning

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Commits on Jun 23, 2020

• regenerate answers

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• Support non periodic boundaries?

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Commits on Jun 26, 2020

• Merge branch 'master' into neighbour-search

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Commits on Jul 2, 2020

• Add kwa to select calls

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  6c318dc

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• ds → dx

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• Return "arr" not "tmp" variable

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• Each line for its argument

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• Minor nits in docstrings

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• Using python-friendly syntax

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• Remove duplicates in testing file

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• Merge

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• _block_reorder -> _block_order

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• Field detector does not have a block_order argument

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Commits on Jul 3, 2020

• Reorder if necessary

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Commits on Jul 16, 2020

• Merge branch 'master' into neighbour-search

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Commits on Jul 17, 2020

• Take comments into account

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• Inform Cython about strides

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• Merge

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Commits on Jul 18, 2020

• tr -> data

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• Make isort happy

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• Fix flaking

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