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This updates how we do static type checking, and fixes some issues on
main
.The biggest change is moving the
mypy
linting check out of.pre-commit
. As mentioned in #209, we need all the typed dependencies in the environment running the check. The one managed by .pre-commit was lacking several dependencies (like xarray and Zarr) and so we weren't benefiting from static type checking at those boundaries. We can move it back into pre-commit, but we need to make sure that all our dependencies are duplicated there.I'll explain some of the type changes inline.