Huge update - Compatibility with Ansys 2022 R2 (#142)

[zlatko-minev]

• Update README.md

• Update README.md

• fix typo

• update information on conda forge install

• add conda badge to readme

• add information on pypi install and name

• fix typo

• add info on pypi install and note on package name

• add pypi badge to readme via fury.io

• Merge remote-tracking branch 'upstream/master' into Asaf_branch

• Update core_quantum_analysis.py

allows to print result and print variation to be used togther where the variation to be printed is give by an integer

• Update core_quantum_analysis.py

• Update core_quantum_analysis.py

• Update README.md

• Update README.md

• Update README.md

• Update README.md

• Update README.md

• Update README.md

• Update README.md

• Update README.md

• Update README.md

• Update about.rst

• Update about.rst

• Update about.rst

• Update installation.rst

• Update README.md

• Update README.md

• Sorted Qs and freqs

Instead of having the sorting of the dataframe as string indices (e.g. '0', '1', '10', '2'...) it is now sorted as integers ('0', '1', '2', ... , '10'). Only relevant for >10 variations.

• Update README.md

• Make package name in setup.py match name on PyPI

• Remove old conda recipe

See https://github.com/conda-forge/pyepr-quantum-feedstock for conda recipe

• Version 0.8.4

• Create greetings.yml

• Create manual.yml

• Create Q3D setup within HfssDesign

• Create publish-to-pypi

• Rename publish-to-pypi to publish-to-pypi.yml

• Update README.md

• Update version from 0.8.4 to 0.8.4.2

• Fixed bug with port impedance in ansys.py

• Modify how to connect to Ansys

• Update config_user.py

• Edit yml file

• Update publish-to-pypi.yml

• Updated version number

• If a project or design is missing in Ansys app, then return None and … (If a project or design is missing in Ansys app, then return None and … #68)

• If a project or design is missing in Ansys app, then return None and give a warning.

• Update warnings to be more accurate.

• Revert accidental change.

• typo and logger add for no active design

• Add method to allow user to add a new Q3d to project referenced in ProjectInfo

• Updated version number

• Fix get_setup method

• correction to enable q3d design setup default + removing error in get_objects_in_group() (correction to enable q3d design setup default + removing error in get_objects_in_group() #70)

• correction to enable q3d design setup default

• prevent unnecessary error when modeler is not defined in get_objects_in_group

• 209 if design exists add it (209 if design exists add it #71)

• Save before switching branches.

• Add changes which were part of merge.

• Update where the flag needs to be passed.

• Need method instead of getting a list of designs.

• Remove the previous solution, Decide with different solution.

• Change to version 0.8.4.5 .

• Remove reference to yapf.

• Ansys version update for Z matrices

• Update ansys.py for Ansys 2020

• get_setup fixed to use the passed setup name + typos

• up-rev

• Create pyEPR.bib

• Update pyEPR.bib

• Update README.md

• Update README.md

• Update README.md

• Added ansys calculator functions

Two functions that return vectors tangent and normal to a surface. I used it to calculate surface participation ratios, e.g.:
p_metal = t* (E_surface_metal / UE)
print(f'Metal-Air/Metal-Substrate participation ratio, p_MA = p_MS = {p_metal:.3}')

#SA participation ratio
vecE_normal = vecE.normal2surface('chip_holder1').__div__(epsilon_r) #Complex Vector
vecE_tangent = vecE.tangent2surface('chip_holder1').__mul__(epsilon_r) #Complex Vector
vec_E_total = vecE_normal.__add__(vecE_tangent)
E_squared = vec_E_total.dot(vecE).__abs__().real().__pow__(2)
E_surface = E_squared.integrate_surf(name='chip_holder1').evaluate()
E_surface -= E_surface_metal

p_SA = t* (E_surface / UE)
print(f'Air-Substrate participation ratio, p_SA = {p_SA:.3}')

• Typos mainly

Also one change where an error is raised when pint is not properly imported.

• Update ansys.py

• Update ansys.py

• Update README.md

• Update pyEPR.bib

• Update pyEPR.bib

• Update pyEPR.bib

• Update core_quantum_analysis.py

Get numeric frequencies results should retrieve f_ND, not f_1. Some typos.

• Updates linguist's calculation for pyEPR

• Typos

• Mostly typos, some corrections

In core_quantum_analysis:
Rows 671-674: update to modes that are not the first. Row 917: trying to get pandas to plot with the right label. Unsuccessfully.

• clean_up_solutions functions and some typos

clean_up_solutions function for an Ansys design (to avoid analysis of all variations). Also removed index name for frequencies and typos

• Update core_quantum_analysis.py

Fixed #83

• Tutorial2: Correct import of CalcObject to pyEPR.ansys

• Indentation after was wrong and variable swp_var was never defined

• fixed mode number error in QuantumAnalysis

fixed KeyError when '0' is not in variations for QuantumAnalysis. updated type hint for QuantumAnalysis.analyze_variation

fix mode number error in QuantumAnalysis

• Update back_box_numeric.py

• fix log plot bug if q__coupling isnot there

• Update core_quantum_analysis.py

• Update the init and setup files before creating a tag.

• Update back_box_numeric.py

Fix typo

• Add pylint CI check

• Fix old keyword argument name in first tutorial

• Check for infinite values in the Quality Factors.

• Change syntax to pass pylint. In particular, separate numpy from pandas.

• Add int cast to pass pylint.

• Change syntax to pass pylint.

• Disable the pylint warning.

• Use updated tag to include fix for issue Plot Hamiltonian results is not working due to inf values in data frame. #96.

• Systematically fix typos in code and documentation (Systematically fix typos in code and documentation #99)

• Test compiling docs in CI (Test compiling docs in CI #104)

• Add dissipative elements as arguments to ProjectInfo (Add dissipative elements as arguments to ProjectInfo #103)

• Fix docstrings formatting (Fix docstrings formatting #101)

• https://securitylab.github.com/research/github-actions-preventing-pwn-requests/ is the reason to update. This allows first time users that have forked the repository to make a pull request. (https://securitylab.github.com/research/github-actions-preventing-pwn… #110)

• Replace attrdict to addict for python 3.10 compatibility (Replace attrdict to addict for python 3.10 compatibility #108)

• Replace Attrdict to addict.Dict for python>=3.10 compatibility

• Add one line for filtering addict.Dict from obj's attributes.

• replace attrdict to addict

• add python 3.10 to classifiers

• Add python 3.9 in setup.py

• Prepare for new tag for pyepr for pypi. (Prepare for new tag for pyepr for pypi. #112)

• Update the README to reflect addict vs attrdict in both files.

• Make the type hint more accurate.

• Current code expects None values, as opposed to empty list.

• Prepare to use next tag for Metal.

• Add variation labels to plots in hfss_report_full_convergence (Add variation labels to plots in hfss_report_full_convergence #119)

• Improve assorted docstrings

• Add variation labels to HFSS convergence report

• Add other parametric sweep options (Add other parametric sweep options #117)

• fix keyboard mash?

• Implemented all available options for parametric sweep definitions and parametric sweep from file.

• Addition of demo tutorial and associated csv file

• Add DrivenTerminal support (Add DrivenTerminal support #121)

• Add single surface DistributedAnalysis.get_Qsurface (Add single surface DistributedAnalysis.get_Qsurface #123)

• Fix EPR sign bug that caused EPR to always be positive (Fix EPR sign bug that caused EPR to always be positive #125)

• Update README.md

• Update version to 0.8.5.6 for EPR sign bug fix (Update version to 0.8.5.6 #126)

• Fix EPR bug and bump to version 0.8.5.7

• Pass lv=lv to evaluate

• Update version to 0.8.5.7 in init.py

• Variation support to calc_p_electric_volume (Variation support to calc_p_electric_volume #132)

• Support synchronised variables in Optimetrics.create_setup (Support synchronised variables in Optimetrics.create_setup #130)

• Fix code block formattings

• Implement synchronised sweep support in Optimetrics

• Don't extend hfss_report_full_convergence vertically (Don't extend hfss_report_full_convergence vertically #135)

• Support loss tangents for different surfaces in do_EPR_analysis (Support loss tangents for different interfaces (surfaces) in do_EPR_analysis #144)

• Fix The .gitignore file is missing _config_user #145 .gitignore (Fix #145 .gitignore #146)

• Add dtype to empty Pandas Series (Add dtypes to empty Pandas Series #139)

• Refactor DataFrame.append to pd.concat (Refactor DataFrame.append to pd.concat #138)

• Replace usage of np.float with float (Numpy 1.24 floating problem #147) (Replace usage of np.float with float (#147) #150)

The epr_numerical_diagonalization function uses np.float which has been deprecated in Numpy.

Refer https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations

The continued usage of np.float yields the following error in the epr_numerical_diaganolization function when later versions of Numpy is used.

"AttributeError: module 'numpy' has no attribute 'float'."

This commit replace np.float with float to solve this error.

• Correctly select a few modes in analyze_variation (Correctly select a few modes in analyze_variation #149)

• Fix mode selection in analyze_variation

Addressing issue #148: analyze_variation incorrectly chooses Pj, Sj, Om, PHI_zpf when passed a subset of modes

• Remove redundant frequency selection

The frequencies are already correctly selected outside of this if-statement, so this is not necessary

• Update setup.py

• Update init.py

• Update core_distributed_analysis.py (Update core_distributed_analysis.py #152)

out-commenting a property not supported in latest version. Only visual impact

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[zlatko-minev]

@AndersenQubitLab - this is the same PR but not to pull into main, can you double check it looks ok and not replacing any new functionality?