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23 Open 4 Closed
23 Open 4 Closed
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Issues list

"kseq_count -a" returns a negative record count for a large file
#35 opened Oct 16, 2023 by afmcc
does tardis range check sampling proportion ?
#34 opened Apr 4, 2022 by afmcc
tardis does not check exit code from kseq_split
#33 opened Apr 4, 2022 by afmcc
need to modify slurm array splitting
#32 opened Mar 6, 2020 by afmcc
compressed output condition should use force option
#31 opened Oct 9, 2019 by afmcc
bug in exception handler
#30 opened Oct 6, 2019 by afmcc
kseq_count should clean up its /tmp file after it has finished with it
#29 opened Sep 12, 2019 by afmcc
error sampling paired fastq
#27 opened Nov 1, 2018 by afmcc
max_tasks is only approximately honored
#26 opened Aug 2, 2018 by afmcc
tardis dies if an expected output file is not there (e.g. job was killed)
#25 opened Jun 24, 2018 by afmcc
test tardis symlinking instead of copying ; add symlink copy of output files
#24 opened Jun 24, 2018 by afmcc
improve toml config file handling
#22 opened May 18, 2018 by afmcc
error using --hpctype local
#21 opened May 9, 2018 by afmcc
2
error attempting to set non-default job template via toml file
#20 opened May 9, 2018 by afmcc
setup.py needs updating
#16 opened Apr 12, 2018 by afmcc
when processing -shell-include-file, new include replaces default include - it probably should append to it
#10 opened Mar 21, 2018 by afmcc
add detection of launch-time env and optional propagation to run-time
#9 opened Mar 21, 2018 by afmcc
minimum sample size not honoured if chunk size is set
#7 opened Mar 7, 2018 by afmcc
kseq_count seg faults if file does not exist
#5 opened Feb 28, 2018 by afmcc
tardis should (optionally) renice itself after starting
#4 opened Jan 22, 2018 by afmcc
tardis should (optionally ?) launch kseq_split on cluster, not locally
#3 opened Jan 22, 2018 by afmcc
tardis should attempt to check for slurm max array size config before adopting a default
#2 opened Nov 23, 2017 by afmcc
problem with huge number of chunks (362407)
#1 opened Nov 16, 2017 by afmcc
ProTip! What’s not been updated in a month: updated:<2024-11-01.