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Test suite & minor updates to examples & updates to 300_pointneuron example #100

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merged 18 commits into from
Aug 11, 2019

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pgleeson
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  • Add 4 examples of I&F cells (one or ten cell networks) in examples/sim_tests
  • Adding BASE_DIR in lines like "node_sets_file": "$BASE_DIR/node_sets.json" for clarity
  • CSV files for nodes have been regenerated with latest bmtk & order of entries altered (headers still match values)
  • A file examples/test.sh has been added which will go through (most) examples and build/rerun simulations for quick check

@wvangeit This test suite is based on yours here #64, but I've not added the hh cell yet

* 'master' of github.com:AllenInstitute/sonata:
  updating 9_cells example
  updating config file and adding magic to spikes h5
  adding node-sets
  fixing positions column to match SONATA standard
  fixing example files
  adding point neuron example
* 'master' of github.com:AllenInstitute/sonata:
  Rotate cells only around Y-axis in the 300 cell example for better appearance
  Morphologies reoriented and recentered
  Adding missing network field in 5 and 9 cell simulation_config.json samples
  Fixing spike files in 300_intfire example
  Fixing spike sorting attribute to be "by_time" and not "time"
  Minor edit in reporting
  Remove Python module with pre-final reporting code
* 'master' of github.com:AllenInstitute/sonata:
  updating setup metadata for pypi
  Fixing so that all examples use model_name instead of pop_name
  Updating pysonata code
  Specify how to represent node types when `target_simulator` is "NEST" or "PyNN" (AllenInstitute#33)
Add test_pynn script for 300intfire
Add analyse output for 300cells
@pgleeson pgleeson changed the title Test suite & minor updates to examples Test suite & minor updates to examples & updates to 300_pointneuron example Apr 30, 2019
@kaeldai kaeldai merged commit b8fc80c into AllenInstitute:master Aug 11, 2019
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2 participants