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@Atkinson-Lab

The Atkinson Lab at Baylor College of Medicine

Code created by the Atkinson lab at Baylor College of Medicine lives here. We work on population and statistical genomics across diverse populations.

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  1. Tractor Tractor Public

    Scripts for implementing the Tractor pipeline

    Jupyter Notebook 45 7

  2. Tractor-tutorial Tractor-tutorial Public

    Jupyter Notebook 12 4

Repositories

Showing 5 of 5 repositories
  • TractorWorkflow Public

    Nextflow workflow to streamline running Tractor GWAS on your input cohort

    Atkinson-Lab/TractorWorkflow’s past year of commit activity
    0 MIT 1 0 1 Updated Sep 19, 2024
  • Tractor-tutorial Public
    Atkinson-Lab/Tractor-tutorial’s past year of commit activity
    Jupyter Notebook 12 4 1 0 Updated Sep 14, 2024
  • Tractor Public

    Scripts for implementing the Tractor pipeline

    Atkinson-Lab/Tractor’s past year of commit activity
    Jupyter Notebook 45 MIT 7 4 0 Updated Aug 21, 2024
  • LAI-sims-accuracy Public

    Code for determining local ancestry inference accuracy

    Atkinson-Lab/LAI-sims-accuracy’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Aug 2, 2022
  • Post-QC Public

    Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a reference panel.

    Atkinson-Lab/Post-QC’s past year of commit activity
    Python 10 5 1 0 Updated Jun 10, 2019

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