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@Atkinson-Lab The Atkinson Lab at Baylor College of Medicine

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    5 repositories

    • TractorWorkflow

      Public
      Nextflow workflow to streamline running Tractor GWAS on your input cohort
      MIT License
      •2•0•0•1•Updated Sep 19, 2024Sep 19, 2024

    • Tractor-tutorial

      Public
      Jupyter Notebook
      •4•12•1•0•Updated Sep 14, 2024Sep 14, 2024

    • Tractor

      Public
      Scripts for implementing the Tractor pipeline
      tractorgwas-modeltractor-pipeline
      Jupyter Notebook
      •
      MIT License
      •8•47•4•0•Updated Aug 21, 2024Aug 21, 2024

    • LAI-sims-accuracy

      Public
      Code for determining local ancestry inference accuracy
      Shell
      •
      MIT License
      •0•0•0•0•Updated Aug 2, 2022Aug 2, 2022

    • Post-QC

      Public
      Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a reference panel.
      Python
      •5•10•1•0•Updated Jun 10, 2019Jun 10, 2019