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fix: lowercase SIFs dir
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kelly-sovacool committed Dec 2, 2024
1 parent 8be081b commit 6ca118d
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Showing 2 changed files with 3 additions and 3 deletions.
2 changes: 1 addition & 1 deletion assets/slurm_header_biowulf.sh
Original file line number Diff line number Diff line change
Expand Up @@ -10,4 +10,4 @@

module load ccbrpipeliner
module load nextflow
NXF_SINGULARITY_CACHEDIR=/data/CCBR_Pipeliner/SIFS
NXF_SINGULARITY_CACHEDIR=/data/CCBR_Pipeliner/SIFs
4 changes: 2 additions & 2 deletions conf/biowulf.config
Original file line number Diff line number Diff line change
Expand Up @@ -20,11 +20,11 @@ params {
singularity {
enabled = true
autoMounts = true
cacheDir = "/data/CCBR_Pipeliner/SIFS"
cacheDir = "/data/CCBR_Pipeliner/SIFs"
envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOBID,SINGULARITY_BINDPATH'
}

env.SINGULARITY_CACHEDIR = "/data/CCBR_Pipeliner/SIFS"
env.SINGULARITY_CACHEDIR = "/data/CCBR_Pipeliner/SIFs"

process.clusterOptions = ' --gres=lscratch:200 '
process.scratch = '/lscratch/$SLURM_JOB_ID'
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