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fix: pip -e and -t don't get along well
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kelly-sovacool authored Oct 9, 2023
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6 changes: 2 additions & 4 deletions .github/CONTRIBUTING.md
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Expand Up @@ -28,13 +28,11 @@ If you use VS code, installing [nf-core extension pack](https://marketplace.visu

## Installation

For testing and debugging, We recommend installing the dev version of champagne in editable mode to a user-specific location.
For testing and debugging, We recommend installing the dev version of champagne to a user-specific location.

```
git clone https://github.com/CCBR/CHAMPAGNE
mkdir -p ~/bin/champagne
pip install -e CHAMPAGNE -t ~/bin/champagne
pip install ./CHAMPAGNE -t ~/bin/champagne
export PATH="$HOME/bin/champagne/bin:$PATH"
```

Then you can run your local version of champagne, make edits to the code as needed, and run your edited version again without reinstalling it.

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