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ikb6 edited this page Aug 29, 2024 · 35 revisions

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MicrobeTrace is an intuitive, powerful, free web-browser based application that uses a combination of genomic and/or epidemiological data to display customizable networks and other visuals.

The visualization can be customized using supplemental data sources like demographic data, geospatial data and mathematical inferences like the most probable transmission pathways. MicrobeTrace is a highly responsive, visual sequence analytics tool which overlay genomic and epi data using simple point and click interfaces , reducing the gap between data production and analytics and help you to discover, understand, and display relationships between patients, pathogen sequences or places (nodes). MicrobeTrace can be deployed on laptops to locations without any Internet access, thereby reducing both the startup cost and analysis time and effort. Click on the video link below to get a 2 minute glimpse of what the tool can do!

MicrobeTrace- a quick tour

Original publication describing the tool MicrobeTrace: Retooling molecular epidemiology for rapid public health response

Ready to explore MicrobeTrace?

Follow this link,

NOTE: When you click on the link above and accept the EULA, MicrobeTrace will be automatically installed on your PC.

Read through the rest of the page for training resources before you try the tool.

If you'd rather just reach us to ask questions or would like a live demonstration of the tool, email us at : microbetrace@cdc.gov

Download and read the user manuals below- now available in multiple languages!!

ENGLISH (https://github.com/CDCgov/MicrobeTrace/files/9577093/MicrobeTrace_User_Manual_v0.6.2_Oct_2021.pdf)

SPANISH (https://github.com/CDCgov/MicrobeTrace/raw/master/docs/MicrobeTrace_manual_May_2021_Espanol_508.docx)

FRENCH (https://github.com/CDCgov/MicrobeTrace/raw/master/docs/MicrobeTrace_manual_May_2021_FRENCH(FRANCE).docx)

MANDARIN (https://github.com/CDCgov/MicrobeTrace/raw/master/docs/21_325559-A_MicrobeTrace_final_Chinese.pdf)

If you prefer watching a demo, click below for the training webinar

https://www.youtube.com/watch?v=5E-_Kb7yvHU)

Before Use

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Simulated Data:

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View Docs Demo
2D Network Read 🗎 Watch ▶️
3D Network Read 🗎 Watch ▶️
Histogram Read 🗎 Watch ▶️
Table Read 🗎 Watch ▶️
Aggregation Read 🗎 Watch ▶️
Bubbles Read 🗎 Watch ▶️
Flow Diagram Read 🗎 Watch ▶️
Scatterplot Read 🗎
Waterfall Read 🗎 Watch ▶️
Map Read 🗎 Watch ▶️
Globe Read 🗎
Gantt Read 🗎 Watch ▶️
Timeline Read 🗎
Heatmap Read 🗎 Watch ▶️
Phylogenetic Tree Read 🗎 Watch ▶️
Sequences Read 🗎 Watch ▶️

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