Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions-rs-plus/clippy-check@cbcfbff5103c40b26d7077f164f0ec6052036081. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Unexpected input(s) 'token', valid inputs are ['toolchain', 'args', 'use-cross']

warning: unused import: `bam::record::Aux` --> src/convert.rs:20:24 | 20 | use rust_htslib::{bam, bam::record::Aux, bam::Read}; | ^^^^^^^^^^^^^^^^ | = note: `#[warn(unused_imports)]` on by default

warning: unused import: `noodles_util::alignment` --> src/convert.rs:24:5 | 24 | use noodles_util::alignment; | ^^^^^^^^^^^^^^^^^^^^^^^

warning: unused variable: `v` --> src/convert.rs:194:17 | 194 | for (k, v) in hdrv.reference_sequences().iter() { | ^ help: if this is intentional, prefix it with an underscore: `_v` | = note: `#[warn(unused_variables)]` on by default

warning: variable `first_pass` is assigned to, but never used --> src/convert.rs:381:13 | 381 | let mut first_pass = true; | ^^^^^^^^^^ | = note: consider using `_first_pass` instead

warning: value assigned to `first_pass` is never read --> src/convert.rs:388:9 | 388 | first_pass = false; | ^^^^^^^^^^ | = help: maybe it is overwritten before being read? = note: `#[warn(unused_assignments)]` on by default

warning: this call to `as_ref` does nothing --> src/convert.rs:259:36 | 259 | str::from_utf8(<BStr as AsRef<[u8]>>::as_ref(bstr).as_ref())? | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `<BStr as AsRef<[u8]>>::as_ref(bstr)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_asref = note: `#[warn(clippy::useless_asref)]` on by default

warning: this call to `as_ref` does nothing --> src/convert.rs:272:36 | 272 | str::from_utf8(<BStr as AsRef<[u8]>>::as_ref(bstr).as_ref())? | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `<BStr as AsRef<[u8]>>::as_ref(bstr)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_asref

warning: this call to `as_ref` does nothing --> src/convert.rs:464:40 | 464 | str::from_utf8(<BStr as AsRef<[u8]>>::as_ref(bstr).as_ref())? | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `<BStr as AsRef<[u8]>>::as_ref(bstr)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_asref

warning: this call to `as_ref` does nothing --> src/convert.rs:477:40 | 477 | str::from_utf8(<BStr as AsRef<[u8]>>::as_ref(bstr).as_ref())? | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `<BStr as AsRef<[u8]>>::as_ref(bstr)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_asref

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions-rs-plus/clippy-check@cbcfbff5103c40b26d7077f164f0ec6052036081. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Unexpected input(s) 'token', valid inputs are ['toolchain', 'args', 'use-cross']

warning: unused import: `bam::record::Aux` --> src/convert.rs:20:24 | 20 | use rust_htslib::{bam, bam::record::Aux, bam::Read}; | ^^^^^^^^^^^^^^^^ | = note: `#[warn(unused_imports)]` on by default

warning: unused import: `noodles_util::alignment` --> src/convert.rs:24:5 | 24 | use noodles_util::alignment; | ^^^^^^^^^^^^^^^^^^^^^^^

warning: unused variable: `v` --> src/convert.rs:194:17 | 194 | for (k, v) in hdrv.reference_sequences().iter() { | ^ help: if this is intentional, prefix it with an underscore: `_v` | = note: `#[warn(unused_variables)]` on by default

warning: variable `first_pass` is assigned to, but never used --> src/convert.rs:381:13 | 381 | let mut first_pass = true; | ^^^^^^^^^^ | = note: consider using `_first_pass` instead

warning: value assigned to `first_pass` is never read --> src/convert.rs:388:9 | 388 | first_pass = false; | ^^^^^^^^^^ | = help: maybe it is overwritten before being read? = note: `#[warn(unused_assignments)]` on by default

warning: this call to `as_ref` does nothing --> src/convert.rs:259:36 | 259 | str::from_utf8(<BStr as AsRef<[u8]>>::as_ref(bstr).as_ref())? | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `<BStr as AsRef<[u8]>>::as_ref(bstr)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_asref = note: `#[warn(clippy::useless_asref)]` on by default

warning: this call to `as_ref` does nothing --> src/convert.rs:272:36 | 272 | str::from_utf8(<BStr as AsRef<[u8]>>::as_ref(bstr).as_ref())? | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `<BStr as AsRef<[u8]>>::as_ref(bstr)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_asref

warning: this call to `as_ref` does nothing --> src/convert.rs:464:40 | 464 | str::from_utf8(<BStr as AsRef<[u8]>>::as_ref(bstr).as_ref())? | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `<BStr as AsRef<[u8]>>::as_ref(bstr)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_asref

warning: this call to `as_ref` does nothing --> src/convert.rs:477:40 | 477 | str::from_utf8(<BStr as AsRef<[u8]>>::as_ref(bstr).as_ref())? | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `<BStr as AsRef<[u8]>>::as_ref(bstr)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_asref

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.