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Welcome to CellTracksColab, your comprehensive platform for analyzing cell migration tracks. Whether you're a beginner or an experienced researcher, our platform offers intuitive guidance every step of the way. You'll find detailed explanations in the notebooks to help you navigate the analysis process. Plus, a test dataset is provided to get you started immediately.
To begin your analysis journey, click the "Open In Colab" button below, corresponding to your data type. For a seamless experience, right-click the button and select "Open in a new tab."
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For TrackMate Data:
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For Other Data:
Prepare for your analysis journey. Understand the data requirements, familiarize yourself with the recommended folder hierarchy, and get hands-on with our test dataset.
Get Started with the General notebook
Get Started with the TrackMate notebook
- 🛠 Prepare the Session and Load Your Data
- 📈 Compute Additional Metrics
- 🎨 Plot Track Parameters
- 🔎 Quality Control
- 🌌 Explore Your High-dimensional Data
Each section breaks down complex analysis into digestible steps, ensuring a smooth and comprehensive understanding.
Make CellTracksColab truly yours. Add custom analyses, expand its capabilities, and contribute to the community. Learn the best practices and get creative!
From FAQs to troubleshooting tips, you can find all the help you need to make your analysis journey.
