Track Visualization
Visualizing raw tracks is the first critical step, ensuring that your data is loaded correctly:
- The platform visualizes tracks for each loaded field of view.
- Use the dropdown menu to select and inspect individual files dynamically.
- Process all fields of view, which will generate a pdf of each file in the Tracks folder in your results folder.
- Origin-Normalized Plot for each field of view will generate plot where each track originates from relative to a common reference point (0,0) in a coordinate system.
- Process all field of view will generate a pdf of an Origin-Normalized Plot from each file into Tracks folder on your results folder.
- Origin-Normalized Plot for each condition and repeat will generate a plot where all repeats can be visualized in one plot.
- Origin-Normalized Plot for each condition combines all plots of certain conditions in one plot.
- Plot the migration vectors for each field of view will generate a migration vector for each cell track.
- The orientation of the arrow represents the direction of migration, pointing from the starting position to the ending position.
- The arrowhead size represents the vector's magnitude, with longer vectors having larger arrowheads.
- Color represents the magnitude of the vectors. Lighter color indicate a longer vector.
