Skip to content

Issues: Clinical-Genomics/cg

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

80 Open 1,134 Closed
80 Open 1,134 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Orders containing only external data should have the status set to open
#4283 opened Mar 12, 2025 by karlnyr
1 task
Tag Orders containing samples with External data samples with "external-data"
#4282 opened Mar 12, 2025 by karlnyr
1 task
Decouple Compression/decompression completion from rest of the code
#4281 opened Mar 12, 2025 by islean
See Upload Error in TB Effort M Gain L Urgency M
#4276 opened Mar 11, 2025 by RasmusBurge-CG
1 task
(Re-)enable TIDDIT coverage and UPD tracks for Scout upload
#4275 opened Mar 11, 2025 by dnil
(Pipeline Implementation) Points to clarify with devbio
#4273 opened Mar 7, 2025 by islean
5
Provide customers with a valid JSON-file for FASTQ and RML orders
#4272 opened Mar 7, 2025 by Vince-janv
@islean
2
Technical debt: Reference path not used in Crunchy technical-debt Complicating development in the repo
#4263 opened Mar 4, 2025 by islean
Add assemble file to the files to delivery for microSALT sample tags Effort S Gain S Urgency M
#4256 opened Feb 28, 2025 by karlnyr
1 task
[Pipeline integration] Create correct nextflow sample sheet for Raredisease
#4254 opened Feb 28, 2025 by diitaz93
Add validation that samples within a case have the same analysis type technical-debt Complicating development in the repo
#4253 opened Feb 28, 2025 by diitaz93
2 tasks
1
Allow the user to specify the amount of cases to start with "start-available" for balsamic and MIP-DNA Effort S Gain L Urgency L
#4251 opened Feb 27, 2025 by karlnyr
2 tasks
PacBio post-processing runs and fails on running sequencing runs
#4249 opened Feb 26, 2025 by Vince-janv
Assign the correct priority to a raredisease CaseConfig
#4240 opened Feb 21, 2025 by diitaz93
[Pipeline integration] Create correctly the params file for raredisease
#4239 opened Feb 21, 2025 by diitaz93
ordering - unclear error message when mandatory columns are empty customer-experience
#4223 opened Feb 18, 2025 by diitaz93
Change delivery message for taxprofiler Effort S Gain M Urgency L
#4222 opened Feb 18, 2025 by beatrizsavinhas
1 task
Standardized Organism Selection for Reliable Microbial Typing Effort M Gain M Urgency M
#4217 opened Feb 18, 2025 by karlnyr
7 tasks
Create a TowerSubmitter
#4216 opened Feb 17, 2025 by Vince-janv
Create the SubProcessSubmitter
#4215 opened Feb 17, 2025 by Vince-janv Standardised pipeline integration
Create MicrosaltConfigurator
#4213 opened Feb 17, 2025 by Vince-janv Standardised pipeline integration
Create RarediseaseConfigurator
#4212 opened Feb 17, 2025 by Vince-janv Standardised pipeline integration
@diitaz93
Create a TowerClient
#4210 opened Feb 17, 2025 by Vince-janv Standardised pipeline integration
1
Post Delivery Messages to Freshdesk
#4199 opened Feb 12, 2025 by RasmusBurge-CG
4 tasks
3
Align cancel samples methods
#4179 opened Feb 5, 2025 by islean
3 tasks
ProTip! Add no:assignee to see everything that’s not assigned.