v1.0

What's Changed

• Add --block option for blocking job submission by @Gab-D-G in #6
• nlin-only stage should initialize with prior stage affine if available by @gdevenyi in #19
• Implement custom iteration numbers for stages by @gdevenyi in #18
• Add center-of-mass initialization of template by @gdevenyi in #20
• Remove repeat application of COM alignment, doesn't improve things by @gdevenyi in #23
• Remove debug exit by @gdevenyi in #24
• Add ability to specify resolution of starting average by @gdevenyi in #25
• Improve informational outputs and logging by @gdevenyi in #26
• Further logging improvement by @gdevenyi in #28
• Add ability to specify a gradient step schedule by @gdevenyi in #29
• Implement DBM by @gdevenyi in #31
• Implement twolevel wrapper around modelbuild.sh by @gdevenyi in #39
• Wrote new python script to compute averages from a set of images to r… by @Gab-D-G in #45
• Implement python-based averaging by @gdevenyi in #49
• Implement transform interpolation and averaging using proper Lie Group Algebra by @gdevenyi in #54
• Initial implementation of volgenmodel by @gdevenyi in #60
• Resampling to common space by @gdevenyi in #65
• Fix empty lists in old bash by @gdevenyi in #82
• Add feature to manually specify registration pyramid by @gdevenyi in #83
• Implement dependent submodule by @gdevenyi in #86
• Properly implement passing down masks in twolevel modelbuild by @gdevenyi in #85
• Welford optimization by @RyanHaniff in #90
• timeseries and warp fix by @RyanHaniff in #93
• Add starting target to twolevel by @gdevenyi in #98
• Update README.md by @hfxcarl in #101
• Add commonspace to subjectspace resampling by @jeremie-fouquet in #100
• Relocate jobs and logfiles for dbm vs modelbuild by @gdevenyi in #102
• Improve starting by @gdevenyi in #103
• Add option to control starting average method independent of ongoing method by @gdevenyi in #108
• Cleanups and small bug fix for #91 by @gdevenyi in #109

New Contributors

• @Gab-D-G made their first contribution in #6
• @gdevenyi made their first contribution in #19
• @RyanHaniff made their first contribution in #90
• @hfxcarl made their first contribution in #101
• @jeremie-fouquet made their first contribution in #100

Full Changelog: https://github.com/CoBrALab/optimized_antsMultivariateTemplateConstruction/commits/v1.0