MedCAT v1.4.0

What's Changed

• CU-26gtw2r: improve docs of MetaCAT, include the CUIs filter into the… by @tomolopolis in #243
• Bump django from 3.2.13 to 3.2.14 in /webapp/webapp by @dependabot in #244
• Update model creator by @sandertan in #245
• Print_stats fix by @antsh3k in #247
• Update model download section in documentation by @sandertan in #248
• Cogstack conn by @antsh3k in #249
• Bug fix during CogstackConn Authentication by @antsh3k in #250
• Bump django from 3.2.14 to 3.2.15 in /webapp/webapp by @dependabot in #254
• CU-1yfef9z Added initial and simplistic CONTRIBUTING.md by @mart-r in #258
• CU-2tuwdjf Move to an identifier based config by @mart-r in #257
• Fixed issue due to data type validation when creating a model pack. by @mart-r in #260
• Fix issue with logging when setting an attribute fails within MixingConfig by @mart-r in #263
• CU-2uhvm87 Pin dill version to less than 0.3.5 to satisfy datasets requirement by @mart-r in #262
• ontology type is wrong with the very latest model by @tomolopolis in #267
• CU-2uhvm87 Pin multiprocess, aiohttp and smart-open versions in order… by @mart-r in #266
• CU-2vzhd93 Logging improvements by @mart-r in #264
• Fix issue with improper conflict merge in previous logging PR by @mart-r in #268
• release v1.4 PR by @tomolopolis in #271

Full Changelog: v1.3.0...v1.4.0

MedCAT 1.3.0

What's Changed

• CU-2n9g6yu: Improve docs by @tomolopolis in #229
• Add the downloaded file and the model description by @baixiac in #228
• Bump django from 3.2.12 to 3.2.13 in /webapp/webapp by @dependabot in #232
• Meta cat upgrade by @w-is-h in #234
• fix create_model_pack to work with ~ directory by @Imipenem in #239
• Deid2 by @w-is-h in #240
• More doc improvements by @tomolopolis in #231
• removes all logging handlers by @zack-kimble in #242

New Contributors

• @Imipenem made their first contribution in #239
• @zack-kimble made their first contribution in #242

Full Changelog: v1.2.8...v1.3.0

MedCAT 1.2.8

Bugs:

• fixed: spacy dependency introduced a bug

Features:

• Downsampling disabled during training
• Random sampling of synonyms during unsupervised training added

Other:

• Documentation organized a bit
• More stuff added to versioning

MedCAT 1.2.7

What's Changed

• Apply type checking to the whole medcat module by @baixiac in #182 #169
• Verify users' UMLS metathesaurus license by @baixiac in #185
• Deid by @w-is-h in #187
• Add the online form for model download by @baixiac in #186
• Remove support for py36 by @baixiac in #189
• Update ethnicity_map.py by @jthteo in #194
• Enable the preprocessing of new SNOMED UK extension release format by @antsh3k in #199
• Implemented a simple versioning system until the main one is done by @w-is-h in #205
• Save checkpoints during (un)supervised training and support training resumption by @baixiac in #206 #181 #178

Full Changelog: v1.2.6...v1.2.7

MedCAT 1.2.6

What's Changed

• Support for neo4j by @w-is-h in #176
• Add model creator, test data and tests by @sandertan in #161
• Add type checks for medcat/*.py by @baixiac in #164
• Load MetaCAT models previously trained / saved on GPU onto CPU by @tomolopolis in #175
• Add precision and recall in return eval_model by @sandertan in #172

Full Changelog: v1.2.5...v1.2.6

MedCAT 1.2.5

Full Changelog: v1.2.4...v1.2.5

MedCAT 1.2.4

Full Changelog: v1.2.3...v1.2.4

MedCAT 1.2.3

• Fix pipeline for creating vocab with gensim 4.1.2
• Add linting to the GH Actions workflow

Full Changelog: v1.2.1...v1.2.2

MedCAT 1.2.0

• Model packs
• New faster and improved meta_cat with batch processing
• Multiprocessing optimized for GPU runs and large scale datasets (100M+ documents)
• Additional method multiprocessing_pipe for parallelism
• Bug fixes

Bug fixes and support for BERT

FIxed bugs from v1 and added support for BERT.