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While trying to building the index with the script provided in the manual:
centrifuge-download -o taxonomy taxonomy
centrigue-download -o library -m -d "archaea,bacteria,viral" refseq > seqid2taxid.map
I obtained the following errors:
I could find reports of similar issues in #201, #245, etc, but I couldn't find a workaround.
also I tried -d "archaea" as the error only occurred with "viral", but the seqid2taxid.map file size was zero and empty.
What I want to check is HBV and I have AB033550.fa file downloaded from NCBI. Is there any way to create a seqid2taixd.map with the refseq I have?
Thanks in advance!
The text was updated successfully, but these errors were encountered:
Hello,
While trying to building the index with the script provided in the manual:
centrifuge-download -o taxonomy taxonomy
centrigue-download -o library -m -d "archaea,bacteria,viral" refseq > seqid2taxid.map
I obtained the following errors:
I could find reports of similar issues in #201, #245, etc, but I couldn't find a workaround.
also I tried -d "archaea" as the error only occurred with "viral", but the seqid2taxid.map file size was zero and empty.
What I want to check is HBV and I have AB033550.fa file downloaded from NCBI. Is there any way to create a seqid2taixd.map with the refseq I have?
Thanks in advance!
The text was updated successfully, but these errors were encountered: