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Das Lab

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  1. arnie arnie Public

    Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

    Python 100 31

  2. KaggleOpenVaccine KaggleOpenVaccine Public archive

    Jupyter Notebook 54 7

  3. draw_rna draw_rna Public

    Draw RNA secondary structures in python.

    Jupyter Notebook 46 15

  4. RiboGraphViz RiboGraphViz Public

    Visualize global properties of large RNAs using GraphViz force-directed layout.

    Jupyter Notebook 20 8

  5. openvaccine-CE-analysis openvaccine-CE-analysis Public archive

    Data and analysis of capillary electrophoresis data measuring mRNA degradation rates for Combinatorial Optimization of mRNA paper, Das and Barna labs (2020).

    Jupyter Notebook 10 2

  6. FARFAR2-SARS-CoV-2 FARFAR2-SARS-CoV-2 Public archive

    Models of SARS-CoV-2 genomic elements generated by FARFAR2

    9 1

Repositories

Showing 10 of 43 repositories
  • m2_util Public

    Utilities to extra mutate-and-map 2D maps from big library sequencing runs

    DasLab/m2_util’s past year of commit activity
    Python 0 0 0 0 Updated Feb 10, 2025
  • ubr Public

    Ultraplex-Bowtie2-RNAframework pipeline for analysis of SHAPE-MaP/DMS-MaP big library runs

    DasLab/ubr’s past year of commit activity
    MATLAB 3 MIT 0 0 0 Updated Feb 9, 2025
  • rr_util Public

    Utilities for generating raw reads datasets for deep neural network training

    DasLab/rr_util’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 8, 2025
  • daslab_tools Public

    Tools, mainly for cluster usage, for Das lab at Stanford

    DasLab/daslab_tools’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 8, 2025
  • arnie Public

    Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

    DasLab/arnie’s past year of commit activity
    Python 100 MIT 31 8 0 Updated Feb 1, 2025
  • Server_Primerize Public

    Primerize PCR Assembly Design Server

    DasLab/Server_Primerize’s past year of commit activity
    HTML 2 1 0 0 Updated Jan 31, 2025
  • KaggleOpenVaccine Public archive
    DasLab/KaggleOpenVaccine’s past year of commit activity
    Jupyter Notebook 54 MIT 7 0 0 Updated Sep 11, 2024
  • draw_rna Public

    Draw RNA secondary structures in python.

    DasLab/draw_rna’s past year of commit activity
    Jupyter Notebook 46 MIT 15 6 3 Updated Sep 3, 2024
  • CASP15_RNA_EM Public
    DasLab/CASP15_RNA_EM’s past year of commit activity
    Jupyter Notebook 3 MIT 0 2 0 Updated Aug 16, 2024
  • Server_RMDB Public

    RNA Mapping Database

    DasLab/Server_RMDB’s past year of commit activity
    JavaScript 4 5 44 0 Updated Aug 5, 2024
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