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Bump cwltool from 3.1.20241112140730 to 3.1.20241217163858 #5190

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@dependabot dependabot bot commented on behalf of github Dec 18, 2024

Bumps cwltool from 3.1.20241112140730 to 3.1.20241217163858.

Release notes

Sourced from cwltool's releases.

3.1.20241217163858

What's Changed

Deps

Full Changelog: common-workflow-language/cwltool@3.1.20241112140730...3.1.20241217163858

Commits
  • c6782ff singularity: improve testing on version 4.x+
  • 527884b Proposal: Improved ProvenanceProfile definition (#2082)
  • f1d192d argpase: colorize the --help output with rich-argparse
  • 6b8f06a Bump pypa/cibuildwheel from 2.21.3 to 2.22.0 (#2076)
  • cc6772e Bump sphinx-rtd-theme from 3.0.1 to 3.0.2 (#2069)
  • 56e159f Bump cibuildwheel from 2.21.3 to 2.22.0 (#2077)
  • 37d8539 Update flake8-bugbear requirement from <24.11 to <24.13 (#2086)
  • d3c7bd5 Fix cwltool:Loop extension definition (#2081)
  • 604fd12 Append "_latest" to image id if no tag is present (#2085)
  • 7fa57dd --no-warnings includes schema-salad; --validate should complain to stdout
  • Additional commits viewable in compare view

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Bumps [cwltool](https://github.com/common-workflow-language/cwltool) from 3.1.20241112140730 to 3.1.20241217163858.
- [Release notes](https://github.com/common-workflow-language/cwltool/releases)
- [Commits](common-workflow-language/cwltool@3.1.20241112140730...3.1.20241217163858)

---
updated-dependencies:
- dependency-name: cwltool
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Dec 18, 2024
@mr-c
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mr-c commented Dec 18, 2024

argparse: colorize the --help output with rich-argparse by in common-workflow-language/cwltool#2080

This organized many of the numerous cwltool options into logical groups with descriptions.

This was just a cosmetic change, the CLI did not break.

No change is required by toil-cwl-runner but it might be helpful to match the groupings for consistency and to make the huge list of options less daunting.

@mr-c
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mr-c commented Dec 18, 2024

Append "_latest" to image id if no tag is present in common-workflow-language/cwltool#2085

The prepull feature should be checked. Perhaps the cwl-utils minimum version should be bumped to the latest (0.36) to match this.

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